miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 201849 0.71 0.791419
Target:  5'- -gGugGCCCGCGGCGcguUCAGCcCCAg- -3'
miRNA:   3'- gaCugUGGGUGCUGC---AGUCGuGGUga -5'
13941 5' -55.7 NC_003521.1 + 127285 0.73 0.707412
Target:  5'- -gGGCACCgCgGCGGCGUCgucgGGCACCGCc -3'
miRNA:   3'- gaCUGUGG-G-UGCUGCAG----UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 214348 0.76 0.539874
Target:  5'- cCUGACGCCCgugAUGugGUCGGCG-CGCUg -3'
miRNA:   3'- -GACUGUGGG---UGCugCAGUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 19032 0.71 0.787874
Target:  5'- -gGGCACCagccgucgcagcaGCGAccCGUCGGCGCCACc -3'
miRNA:   3'- gaCUGUGGg------------UGCU--GCAGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 224050 0.77 0.483175
Target:  5'- uCUGGCgGCCCACGGCGguaaCGGCGCCGa- -3'
miRNA:   3'- -GACUG-UGGGUGCUGCa---GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 99141 0.69 0.878775
Target:  5'- -cGGCGCCCccuagcacgaGCGGCGguagCAGUACCAa- -3'
miRNA:   3'- gaCUGUGGG----------UGCUGCa---GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 91465 0.75 0.588758
Target:  5'- aCUG-UGCCCACGACGcgcccgCGGUACCGCUu -3'
miRNA:   3'- -GACuGUGGGUGCUGCa-----GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 224997 0.69 0.871758
Target:  5'- gCUGGcCGCCUGCGuCGgcgAGCACCACg -3'
miRNA:   3'- -GACU-GUGGGUGCuGCag-UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 43433 0.7 0.857122
Target:  5'- gUGGCGCUCguGCGGCaG-CAGCGCCACc -3'
miRNA:   3'- gACUGUGGG--UGCUG-CaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 208735 0.7 0.841719
Target:  5'- aUGAUAcucuCCCACacCGUCAGCugCACUa -3'
miRNA:   3'- gACUGU----GGGUGcuGCAGUCGugGUGA- -5'
13941 5' -55.7 NC_003521.1 + 156324 0.71 0.80881
Target:  5'- -cGGCGgCgGCGACGUUguuGGCACCGCc -3'
miRNA:   3'- gaCUGUgGgUGCUGCAG---UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 188407 0.71 0.799316
Target:  5'- -cGGCACCgGCaGCGUCGGCggugccaGCCGCUc -3'
miRNA:   3'- gaCUGUGGgUGcUGCAGUCG-------UGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 128375 0.71 0.791419
Target:  5'- -gGAC-CCCAUGAUG-CAGCGCCuGCUg -3'
miRNA:   3'- gaCUGuGGGUGCUGCaGUCGUGG-UGA- -5'
13941 5' -55.7 NC_003521.1 + 224485 0.71 0.781619
Target:  5'- gUGugGaCCGCGacuacggGCGUCAGUACCGCUg -3'
miRNA:   3'- gACugUgGGUGC-------UGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 3704 0.72 0.755078
Target:  5'- cCUG-UGCCCuCGGCGUCGGCAUgGCg -3'
miRNA:   3'- -GACuGUGGGuGCUGCAGUCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 122513 0.72 0.745716
Target:  5'- -aGACGCCCAgCGACGU-GGCGgCGCUc -3'
miRNA:   3'- gaCUGUGGGU-GCUGCAgUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 214681 0.72 0.717099
Target:  5'- -cGuCACCCACGcCGUCucuAGCGCCAUUc -3'
miRNA:   3'- gaCuGUGGGUGCuGCAG---UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 104315 0.73 0.697664
Target:  5'- gCUGGCGCagACGGCGUCggAGCACUGCg -3'
miRNA:   3'- -GACUGUGggUGCUGCAG--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 239773 0.73 0.658238
Target:  5'- -cGGCGCCgGCGACGU-GGCGCgGCUg -3'
miRNA:   3'- gaCUGUGGgUGCUGCAgUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 204097 0.74 0.618492
Target:  5'- -cGACAUCCGCGACGagGGCGUCGCg -3'
miRNA:   3'- gaCUGUGGGUGCUGCagUCGUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.