miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 222810 0.66 0.978447
Target:  5'- uAGCGCGGCucggugguggaaaacGGCGucuGCggGUGGcgAUACACg -3'
miRNA:   3'- -UCGCGCCG---------------CCGC---CG--UACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 163198 0.66 0.977522
Target:  5'- cGGUgGUGGCGGCGGCAgcg----GCAg -3'
miRNA:   3'- -UCG-CGCCGCCGCCGUacuaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 85914 0.66 0.977522
Target:  5'- cAGCugGCGGCcGCGGCugccggggGGgagGUGCACg -3'
miRNA:   3'- -UCG--CGCCGcCGCCGua------CUaa-UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 77273 0.66 0.977522
Target:  5'- cGGCGUGGUcaaCGGCAUGAUgccGUGCc- -3'
miRNA:   3'- -UCGCGCCGcc-GCCGUACUAa--UAUGug -5'
13942 5' -54.6 NC_003521.1 + 71105 0.66 0.977522
Target:  5'- gAG-GCGGCGGCGGgggacgcuuucCAUGAggccUUGcUGCGCc -3'
miRNA:   3'- -UCgCGCCGCCGCC-----------GUACU----AAU-AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 154387 0.66 0.977522
Target:  5'- gGGcCGCGGCGGCgacgacgaGGCgGUGAUcg-ACAUc -3'
miRNA:   3'- -UC-GCGCCGCCG--------CCG-UACUAauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 218432 0.66 0.977522
Target:  5'- cAGCGaCaGCGGCGGCAccacgGAgg--ACAUg -3'
miRNA:   3'- -UCGC-GcCGCCGCCGUa----CUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 65717 0.66 0.977522
Target:  5'- cGGCGCcGCGGCGGCccUGGccg-GCAa -3'
miRNA:   3'- -UCGCGcCGCCGCCGu-ACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 145577 0.66 0.977522
Target:  5'- cGUGCuGCGGCGGCAcGAcgcgGCGg -3'
miRNA:   3'- uCGCGcCGCCGCCGUaCUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 226152 0.66 0.977522
Target:  5'- --aGCGGCGGCacucGGCGUcGUUcaGCGCg -3'
miRNA:   3'- ucgCGCCGCCG----CCGUAcUAAuaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 87472 0.66 0.977522
Target:  5'- cAGCGCuguaGCGGCGGCcgaaGGUgcccaGCACa -3'
miRNA:   3'- -UCGCGc---CGCCGCCGua--CUAaua--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 57587 0.66 0.977522
Target:  5'- gGGCGcCGGCGGCGaaccccgagucaGCGUGccgucGCGCu -3'
miRNA:   3'- -UCGC-GCCGCCGC------------CGUACuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 226367 0.66 0.975332
Target:  5'- cGCGgGaGCGGCGGCugacgccgccgcagGGccgUGUGCACc -3'
miRNA:   3'- uCGCgC-CGCCGCCGua------------CUa--AUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 17661 0.66 0.975079
Target:  5'- gAGCGauGCGGCcuccagacugcgGGCGUGGUUcu-CGCg -3'
miRNA:   3'- -UCGCgcCGCCG------------CCGUACUAAuauGUG- -5'
13942 5' -54.6 NC_003521.1 + 40914 0.66 0.975079
Target:  5'- uAGCgagGCGGgGGCGGCccGGggGaGCGCc -3'
miRNA:   3'- -UCG---CGCCgCCGCCGuaCUaaUaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 137953 0.66 0.975079
Target:  5'- cGCGCGGCGGUgcugcagcaccaGGCG-GAUcucgucGCGCa -3'
miRNA:   3'- uCGCGCCGCCG------------CCGUaCUAaua---UGUG- -5'
13942 5' -54.6 NC_003521.1 + 150663 0.66 0.975079
Target:  5'- aGGCGgcucucCGGCGGCGGCGccgcugcugcUGggUGcugcUGCGCc -3'
miRNA:   3'- -UCGC------GCCGCCGCCGU----------ACuaAU----AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 57272 0.66 0.975079
Target:  5'- cGCGUGGCGGCGucCGUGAc----CGCg -3'
miRNA:   3'- uCGCGCCGCCGCc-GUACUaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 221898 0.66 0.975079
Target:  5'- cGCG-GGCGGCGaGCuaaGGccAUGCACg -3'
miRNA:   3'- uCGCgCCGCCGC-CGua-CUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 235776 0.66 0.975079
Target:  5'- -uCGCGGgGGCGGCGUGccc---CGCc -3'
miRNA:   3'- ucGCGCCgCCGCCGUACuaauauGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.