miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 5' -45.5 NC_003521.1 + 112183 0.66 1
Target:  5'- aGGGcgGCGUcgguacacAGGuCGAAGCGGgcggCGCg -3'
miRNA:   3'- -CCCuaUGCA--------UCC-GUUUUGUCaua-GUG- -5'
13946 5' -45.5 NC_003521.1 + 36979 0.66 1
Target:  5'- uGGGGUagGCGUGcGGCAcgaaGGGCAccAUCACc -3'
miRNA:   3'- -CCCUA--UGCAU-CCGU----UUUGUcaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 137619 0.66 1
Target:  5'- cGGAUGCGggaGGGCGGcuccAGCGGgccCGCg -3'
miRNA:   3'- cCCUAUGCa--UCCGUU----UUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 15725 0.66 1
Target:  5'- -cGAUGCGUcuggaAGaGUAAugguucuuccAACAGUGUCACa -3'
miRNA:   3'- ccCUAUGCA-----UC-CGUU----------UUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 72943 0.66 1
Target:  5'- uGGGuggACG-GGGCGGAAUAGgggCGCc -3'
miRNA:   3'- -CCCua-UGCaUCCGUUUUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 131406 0.66 1
Target:  5'- cGGAUGCGaucGGCcGAGgGGUcgCGCu -3'
miRNA:   3'- cCCUAUGCau-CCGuUUUgUCAuaGUG- -5'
13946 5' -45.5 NC_003521.1 + 228978 0.66 1
Target:  5'- aGGaGGUGCGcGGGCGGcGCAGgaccggcagCACg -3'
miRNA:   3'- -CC-CUAUGCaUCCGUUuUGUCaua------GUG- -5'
13946 5' -45.5 NC_003521.1 + 139123 0.66 1
Target:  5'- gGGGGUugGUugcAGGCcAAGCAGg----- -3'
miRNA:   3'- -CCCUAugCA---UCCGuUUUGUCauagug -5'
13946 5' -45.5 NC_003521.1 + 60700 0.66 1
Target:  5'- gGGGAccCGgGGGCGGcGCGG-GUCGCa -3'
miRNA:   3'- -CCCUauGCaUCCGUUuUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 66872 0.66 0.999999
Target:  5'- uGGGGUcGCGcGGGUcgGGCAGgggCGCg -3'
miRNA:   3'- -CCCUA-UGCaUCCGuuUUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 221636 0.67 0.999999
Target:  5'- gGGGAgGCGc-GGCGGGACcaUGUCGCu -3'
miRNA:   3'- -CCCUaUGCauCCGUUUUGucAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 92703 0.66 0.999999
Target:  5'- cGGGGUGCGgggAGGCuGGGgGGUGa--- -3'
miRNA:   3'- -CCCUAUGCa--UCCGuUUUgUCAUagug -5'
13946 5' -45.5 NC_003521.1 + 103546 0.67 0.999999
Target:  5'- aGGcGUGCGUGGGgAuGACGGggcccagGUCGCc -3'
miRNA:   3'- -CCcUAUGCAUCCgUuUUGUCa------UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 49006 0.67 0.999999
Target:  5'- aGGGcguCGUAGGgG--GCAGUacaGUCACg -3'
miRNA:   3'- -CCCuauGCAUCCgUuuUGUCA---UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 187899 0.66 0.999999
Target:  5'- cGGGcgGCGgGGGCAGgucgaucAGCAGc-UCGCg -3'
miRNA:   3'- -CCCuaUGCaUCCGUU-------UUGUCauAGUG- -5'
13946 5' -45.5 NC_003521.1 + 203552 0.66 0.999999
Target:  5'- uGGGG---GUGGGCA--GCGGggGUCGCg -3'
miRNA:   3'- -CCCUaugCAUCCGUuuUGUCa-UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 145129 0.67 0.999999
Target:  5'- -aGAUGCgGUAGGCGuacGACAGg--CGCa -3'
miRNA:   3'- ccCUAUG-CAUCCGUu--UUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 142848 0.67 0.999998
Target:  5'- gGGGAgGCGgGGGCGGccacGGCGGg--CACg -3'
miRNA:   3'- -CCCUaUGCaUCCGUU----UUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 220025 0.67 0.999998
Target:  5'- aGGcgACGUAGGCG--ACAGagaCACa -3'
miRNA:   3'- cCCuaUGCAUCCGUuuUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 76989 0.67 0.999998
Target:  5'- uGGcgGCGaUGGGCAGGcACGGcAUCAUg -3'
miRNA:   3'- cCCuaUGC-AUCCGUUU-UGUCaUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.