miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 24664 0.66 0.8509
Target:  5'- uUCUaUGCUCCGcGGgcccGGCGCCGGCu -3'
miRNA:   3'- uAGAcGCGGGGUaUUac--CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 194919 0.66 0.8509
Target:  5'- cAUCUGCGUgggagUgGUGAUGGGCuGCaCGGUg -3'
miRNA:   3'- -UAGACGCGg----GgUAUUACCCG-CG-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 71070 0.66 0.843238
Target:  5'- -gCUGCGCCUCuuc--GGGCcGCUGuGCg -3'
miRNA:   3'- uaGACGCGGGGuauuaCCCG-CGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 190499 0.66 0.843238
Target:  5'- gAUCUGCuGCagCCCGUGAUGGG-GUCGa- -3'
miRNA:   3'- -UAGACG-CG--GGGUAUUACCCgCGGCcg -5'
13948 3' -59.6 NC_003521.1 + 78532 0.66 0.843238
Target:  5'- cUCUcccCGuUCCCGUGAUGagacugugucGGCGCCGGUg -3'
miRNA:   3'- uAGAc--GC-GGGGUAUUAC----------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 163352 0.66 0.843238
Target:  5'- gAUCccCGCCUCAUGAaccgccagaaGGaGCGCCGGCc -3'
miRNA:   3'- -UAGacGCGGGGUAUUa---------CC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 170784 0.66 0.842462
Target:  5'- cGUCUugGCGCCCCAcgucccguUGGauccccaacaaguGaCGCCGGCa -3'
miRNA:   3'- -UAGA--CGCGGGGUauu-----ACC-------------C-GCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 101162 0.66 0.840123
Target:  5'- gGUCUGCGUCCCucuccucagacGGCGuccgcgcCCGGCg -3'
miRNA:   3'- -UAGACGCGGGGuauuac-----CCGC-------GGCCG- -5'
13948 3' -59.6 NC_003521.1 + 134023 0.66 0.835398
Target:  5'- ---cGCGUCCCcgGAaucgccGGGCcuGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGuaUUa-----CCCG--CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 54788 0.66 0.835398
Target:  5'- ---cGgGCCCCAgc---GGCGCCGuGCa -3'
miRNA:   3'- uagaCgCGGGGUauuacCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 166491 0.66 0.835398
Target:  5'- ---aGCGCCauCCAgcg-GGGCGCCGcGUc -3'
miRNA:   3'- uagaCGCGG--GGUauuaCCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 191849 0.66 0.834605
Target:  5'- cUCaGCGCCUCGUcuaagauguugucGAuguccguccaacUGGGCGgCGGCg -3'
miRNA:   3'- uAGaCGCGGGGUA-------------UU------------ACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103139 0.66 0.83381
Target:  5'- cUCUGCGCcucgcuacgcacggCCCAgaccuacgccacGGGCGCCcuGGCg -3'
miRNA:   3'- uAGACGCG--------------GGGUauua--------CCCGCGG--CCG- -5'
13948 3' -59.6 NC_003521.1 + 55520 0.66 0.827389
Target:  5'- aGUUUGUcCCCCGc---GGGCucGCCGGCg -3'
miRNA:   3'- -UAGACGcGGGGUauuaCCCG--CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 66623 0.66 0.827389
Target:  5'- ---cGCGaCCCCAacGUGGGCGCgucGCa -3'
miRNA:   3'- uagaCGC-GGGGUauUACCCGCGgc-CG- -5'
13948 3' -59.6 NC_003521.1 + 83901 0.66 0.827389
Target:  5'- uAUCUGCagaagGUCUCGgagGUGGGCuaCGGCa -3'
miRNA:   3'- -UAGACG-----CGGGGUau-UACCCGcgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 217526 0.66 0.827389
Target:  5'- -cCUGCuCCUCGUccgucaugguGGUGGGCGCgGGg -3'
miRNA:   3'- uaGACGcGGGGUA----------UUACCCGCGgCCg -5'
13948 3' -59.6 NC_003521.1 + 121984 0.66 0.827389
Target:  5'- ---cGCGCCugaCCGUGucuaaccuaucGUGGGCG-CGGCa -3'
miRNA:   3'- uagaCGCGG---GGUAU-----------UACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 116870 0.66 0.822505
Target:  5'- -cCUGCGCgCgCA--GUGGcgcggcugcggcggcGCGCCGGCg -3'
miRNA:   3'- uaGACGCGgG-GUauUACC---------------CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 127767 0.66 0.819217
Target:  5'- ---aGCGucuCCUCGUAGUcGGGCGgCGGCc -3'
miRNA:   3'- uagaCGC---GGGGUAUUA-CCCGCgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.