miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 150925 0.66 0.780821
Target:  5'- gCGCCGccGCCGGaGAGCCGCCu----- -3'
miRNA:   3'- gGCGGCc-CGGCC-CUUGGCGGcacugg -5'
13949 5' -63.3 NC_003521.1 + 100438 0.66 0.780821
Target:  5'- gCGgCGGcGCuCGGGAgcaggGCCGCCGaagaagaguggUGACg -3'
miRNA:   3'- gGCgGCC-CG-GCCCU-----UGGCGGC-----------ACUGg -5'
13949 5' -63.3 NC_003521.1 + 4624 0.66 0.780821
Target:  5'- aCG-CGGGCCGcgaugagcGAACCGCCGgcGGCg -3'
miRNA:   3'- gGCgGCCCGGCc-------CUUGGCGGCa-CUGg -5'
13949 5' -63.3 NC_003521.1 + 117909 0.66 0.780821
Target:  5'- gCgGCgGcGGCgGGGGACCGUa--GGCCg -3'
miRNA:   3'- -GgCGgC-CCGgCCCUUGGCGgcaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 55999 0.66 0.780821
Target:  5'- gCCGcCCGcGcGCUGGGAGgCGCUGcGcGCCg -3'
miRNA:   3'- -GGC-GGC-C-CGGCCCUUgGCGGCaC-UGG- -5'
13949 5' -63.3 NC_003521.1 + 123119 0.66 0.779982
Target:  5'- cUCGCCGGGCCGcuguacgaaguacGGcAGCgGCgCGUcggaaaagaagGGCCg -3'
miRNA:   3'- -GGCGGCCCGGC-------------CC-UUGgCG-GCA-----------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 118365 0.66 0.779982
Target:  5'- gCgGUCGuGGUCGuGGGcgacggcGCCGCCGaUGGCUg -3'
miRNA:   3'- -GgCGGC-CCGGC-CCU-------UGGCGGC-ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 202555 0.66 0.772388
Target:  5'- gCGCCGGccuCCuGGGGCUGCUGacccugGGCCg -3'
miRNA:   3'- gGCGGCCc--GGcCCUUGGCGGCa-----CUGG- -5'
13949 5' -63.3 NC_003521.1 + 223670 0.66 0.772388
Target:  5'- aCGCCGcGCCGGGG--CGCCacacGGCCc -3'
miRNA:   3'- gGCGGCcCGGCCCUugGCGGca--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 91933 0.66 0.772388
Target:  5'- cCCGCUGcggaaugcGCCaGGGAGCCGCgGgcacGCCg -3'
miRNA:   3'- -GGCGGCc-------CGG-CCCUUGGCGgCac--UGG- -5'
13949 5' -63.3 NC_003521.1 + 239008 0.66 0.772388
Target:  5'- uCCGCCGGcCCGacuucugcugcuGGAACUGCUGccgGugCu -3'
miRNA:   3'- -GGCGGCCcGGC------------CCUUGGCGGCa--CugG- -5'
13949 5' -63.3 NC_003521.1 + 238761 0.66 0.772388
Target:  5'- gCGCCGGccuCCuGGGGCUGCUGacccugGGCCg -3'
miRNA:   3'- gGCGGCCc--GGcCCUUGGCGGCa-----CUGG- -5'
13949 5' -63.3 NC_003521.1 + 89446 0.66 0.772388
Target:  5'- uCCGCCGGcCCGGuucGCCGCuCGUcuCCc -3'
miRNA:   3'- -GGCGGCCcGGCCcu-UGGCG-GCAcuGG- -5'
13949 5' -63.3 NC_003521.1 + 1327 0.66 0.772388
Target:  5'- cCCGCCGauGGUCGGucGAGCUGuacgcguuguCCGUGuCCg -3'
miRNA:   3'- -GGCGGC--CCGGCC--CUUGGC----------GGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 90301 0.66 0.772388
Target:  5'- aCGaCGGGCgGGcgcGAGCCGCCaGggggcgcugGACCg -3'
miRNA:   3'- gGCgGCCCGgCC---CUUGGCGG-Ca--------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 116782 0.66 0.772388
Target:  5'- gCCGCCGcggcacgcuGGCCGucuACgGCCGcGACCc -3'
miRNA:   3'- -GGCGGC---------CCGGCccuUGgCGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 31733 0.66 0.772388
Target:  5'- aCGCCGcGGCCaccgccuCCGCCGccucGACCg -3'
miRNA:   3'- gGCGGC-CCGGcccuu--GGCGGCa---CUGG- -5'
13949 5' -63.3 NC_003521.1 + 122849 0.66 0.772388
Target:  5'- aCGCCGGcGaCCGagaaaccGAGCC-CCGUGACg -3'
miRNA:   3'- gGCGGCC-C-GGCc------CUUGGcGGCACUGg -5'
13949 5' -63.3 NC_003521.1 + 202308 0.66 0.772388
Target:  5'- uCCGCCGGcCCGacuucugcugcuGGAACUGCUGccgGugCu -3'
miRNA:   3'- -GGCGGCCcGGC------------CCUUGGCGGCa--CugG- -5'
13949 5' -63.3 NC_003521.1 + 180094 0.66 0.772388
Target:  5'- gCCGCCGuucuuGCCcaacagcgucuGGGAGCCGUCGUcGucguCCa -3'
miRNA:   3'- -GGCGGCc----CGG-----------CCCUUGGCGGCA-Cu---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.