miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 227195 0.72 0.394156
Target:  5'- uUCGCCgggGGGCCcggcgcggaGGGGGCCGCgGaGGCCg -3'
miRNA:   3'- -GGCGG---CCCGG---------CCCUUGGCGgCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 226936 0.67 0.691782
Target:  5'- gCGCCGGGCCccccGGcGAaauccauggcggcGCCGCCcgcagaGACCc -3'
miRNA:   3'- gGCGGCCCGG----CC-CU-------------UGGCGGca----CUGG- -5'
13949 5' -63.3 NC_003521.1 + 226858 0.68 0.628126
Target:  5'- gCCGCUGGGCUa-----CGCCGUGAUCc -3'
miRNA:   3'- -GGCGGCCCGGcccuugGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 226353 0.69 0.571868
Target:  5'- cCCGCgGGuagcGCCGcGGGagcggcggcugacGCCGCCGcagGGCCg -3'
miRNA:   3'- -GGCGgCC----CGGC-CCU-------------UGGCGGCa--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 226334 0.78 0.179098
Target:  5'- gCCgGCCGcGGCCGGGGcgcGCCuUCGUGGCCg -3'
miRNA:   3'- -GG-CGGC-CCGGCCCU---UGGcGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 224815 0.66 0.763853
Target:  5'- gCCGCUGGuuccuGCUGGG---CGCCGUGgguGCCu -3'
miRNA:   3'- -GGCGGCC-----CGGCCCuugGCGGCAC---UGG- -5'
13949 5' -63.3 NC_003521.1 + 224673 0.68 0.655905
Target:  5'- gCGCCuGGCCGGcGAgguguACCGgC-UGGCCg -3'
miRNA:   3'- gGCGGcCCGGCC-CU-----UGGCgGcACUGG- -5'
13949 5' -63.3 NC_003521.1 + 224529 0.71 0.449953
Target:  5'- gCCGCCGGGCCGGuaggcACC-CCGgcGCCc -3'
miRNA:   3'- -GGCGGCCCGGCCcu---UGGcGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 224437 0.66 0.767279
Target:  5'- aCCGCuuuCGGGCCGagaugcucaacaccuGGGACgGCUGgGACg -3'
miRNA:   3'- -GGCG---GCCCGGC---------------CCUUGgCGGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 224347 0.66 0.772388
Target:  5'- aCCGCCGGcGCgCGcgc-CCGCCGgagGACg -3'
miRNA:   3'- -GGCGGCC-CG-GCccuuGGCGGCa--CUGg -5'
13949 5' -63.3 NC_003521.1 + 224274 0.69 0.572782
Target:  5'- aCCGCCGGGCCcGccGCUGCCGcaggaggagGACa -3'
miRNA:   3'- -GGCGGCCCGGcCcuUGGCGGCa--------CUGg -5'
13949 5' -63.3 NC_003521.1 + 224030 0.67 0.683544
Target:  5'- gCgGUCGGGgCGGGcGCCGUCGccccuggGACUc -3'
miRNA:   3'- -GgCGGCCCgGCCCuUGGCGGCa------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 223776 0.73 0.379056
Target:  5'- gCUGUCGGcGCCGuu-ACCGCCGUGgGCCg -3'
miRNA:   3'- -GGCGGCC-CGGCccuUGGCGGCAC-UGG- -5'
13949 5' -63.3 NC_003521.1 + 223670 0.66 0.772388
Target:  5'- aCGCCGcGCCGGGG--CGCCacacGGCCc -3'
miRNA:   3'- gGCGGCcCGGCCCUugGCGGca--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 221124 0.68 0.655905
Target:  5'- -gGCCGGGCUGGcGG--UGaUCGUGACCu -3'
miRNA:   3'- ggCGGCCCGGCC-CUugGC-GGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 219458 0.66 0.746502
Target:  5'- aCCGCCaucauGGGCCuGGGGcucaGCCGCCa----- -3'
miRNA:   3'- -GGCGG-----CCCGG-CCCU----UGGCGGcacugg -5'
13949 5' -63.3 NC_003521.1 + 218900 0.69 0.600368
Target:  5'- gCCGCC-GGCCGuGGccgcuuACCGCCGcgcgcuggcGGCCg -3'
miRNA:   3'- -GGCGGcCCGGC-CCu-----UGGCGGCa--------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 217988 0.69 0.58195
Target:  5'- -gGCCGGGCgGGGGGCCGg---GACg -3'
miRNA:   3'- ggCGGCCCGgCCCUUGGCggcaCUGg -5'
13949 5' -63.3 NC_003521.1 + 217461 0.67 0.700897
Target:  5'- aCCGCCGuGGCCugccuGGGcggcaugGACCGUCGUcguuGGCa -3'
miRNA:   3'- -GGCGGC-CCGG-----CCC-------UUGGCGGCA----CUGg -5'
13949 5' -63.3 NC_003521.1 + 217125 0.7 0.535606
Target:  5'- cCCGCuccaCGGGCCuGGAAcagucguCCGCCGcgGGCUg -3'
miRNA:   3'- -GGCG----GCCCGGcCCUU-------GGCGGCa-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.