miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 77042 0.66 0.998232
Target:  5'- aGugGAGGAGGaaGGUGgUGGUGGAg- -3'
miRNA:   3'- cCugCUCCUUCg-CUAUgGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 57813 0.66 0.998232
Target:  5'- aGGACGAGGAGGauu--UCG--GGGCCu -3'
miRNA:   3'- -CCUGCUCCUUCgcuauGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 177469 0.66 0.998232
Target:  5'- cGGCGAcauGGGA-CGAUAUCGAcgauaGGGCCg -3'
miRNA:   3'- cCUGCU---CCUUcGCUAUGGCUa----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 155527 0.66 0.998232
Target:  5'- aGGcguACGAGGGguuGCGGauggaACUGggGGGCCg -3'
miRNA:   3'- -CC---UGCUCCUu--CGCUa----UGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 117503 0.66 0.998232
Target:  5'- cGGCGGGGcguacGGCGGUAugcacuCCG-UGGGCUa -3'
miRNA:   3'- cCUGCUCCu----UCGCUAU------GGCuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 102415 0.66 0.998232
Target:  5'- aGGAgGGGGGAGaCGccACCGGUG-ACa -3'
miRNA:   3'- -CCUgCUCCUUC-GCuaUGGCUACcUGg -5'
13954 5' -52.2 NC_003521.1 + 43780 0.66 0.998232
Target:  5'- cGGGaGAGGggGCGGcaggcGCUGAcGGAUg -3'
miRNA:   3'- -CCUgCUCCuuCGCUa----UGGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 216838 0.66 0.998232
Target:  5'- cGACGAGGAacaggAGCGAUAUgaagCGucccUGG-CCg -3'
miRNA:   3'- cCUGCUCCU-----UCGCUAUG----GCu---ACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 97683 0.66 0.998232
Target:  5'- aGACGgaGGGGAGaUGGUACCGAcgGcGACg -3'
miRNA:   3'- cCUGC--UCCUUC-GCUAUGGCUa-C-CUGg -5'
13954 5' -52.2 NC_003521.1 + 39005 0.66 0.997905
Target:  5'- aGGuguCGAGGccgGAGCGGgcgccGCCGAaGGAUUg -3'
miRNA:   3'- -CCu--GCUCC---UUCGCUa----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 240518 0.66 0.997905
Target:  5'- --cUGGGGAcGCcagACCGGUGGACg -3'
miRNA:   3'- ccuGCUCCUuCGcuaUGGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 140515 0.66 0.997905
Target:  5'- gGGcACGAGGAGGaCGAcgACgCGGagGGAgCCg -3'
miRNA:   3'- -CC-UGCUCCUUC-GCUa-UG-GCUa-CCU-GG- -5'
13954 5' -52.2 NC_003521.1 + 200797 0.66 0.997905
Target:  5'- --cUGGGGAcGCcagACCGGUGGACg -3'
miRNA:   3'- ccuGCUCCUuCGcuaUGGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 152346 0.66 0.997905
Target:  5'- uGGAgacCGAGGAcgccaucacgcAGCuGAaGCUGAcGGACCu -3'
miRNA:   3'- -CCU---GCUCCU-----------UCG-CUaUGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 141943 0.66 0.997905
Target:  5'- -aACGGGGAagAGCGAga-CGGUGcucuGACCg -3'
miRNA:   3'- ccUGCUCCU--UCGCUaugGCUAC----CUGG- -5'
13954 5' -52.2 NC_003521.1 + 174192 0.66 0.997905
Target:  5'- uGACGAGGAGGCaGAUGa-GggGGAg- -3'
miRNA:   3'- cCUGCUCCUUCG-CUAUggCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 196541 0.66 0.997905
Target:  5'- gGGGgGAGGAA-CGAgacucACCGcgGGuACCc -3'
miRNA:   3'- -CCUgCUCCUUcGCUa----UGGCuaCC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 165535 0.66 0.997905
Target:  5'- aGACGAG--AGCGAgACCG-UGGugUg -3'
miRNA:   3'- cCUGCUCcuUCGCUaUGGCuACCugG- -5'
13954 5' -52.2 NC_003521.1 + 191410 0.66 0.997568
Target:  5'- cGGGCGAGcGcGGCGcugucgccgucagccUGCCaGAUGGACa -3'
miRNA:   3'- -CCUGCUC-CuUCGCu--------------AUGG-CUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 66756 0.66 0.997528
Target:  5'- uGGACGAcaucccGcGGGUGAUGCCGccGGcCCa -3'
miRNA:   3'- -CCUGCU------CcUUCGCUAUGGCuaCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.