miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 240100 0.66 0.805168
Target:  5'- gUCUGcUCCCGUgGGCCGgCC-GUACGGCu -3'
miRNA:   3'- -GGACaGGGGCG-CCGGC-GGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 129534 0.66 0.805168
Target:  5'- aCCaGUUCUccauCGCGGCgGCgCUgGCACGGCg -3'
miRNA:   3'- -GGaCAGGG----GCGCCGgCG-GA-CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 221944 0.66 0.805168
Target:  5'- gCCUcGUCCUCGUcGCUGCucagCUGaCACGACa -3'
miRNA:   3'- -GGA-CAGGGGCGcCGGCG----GAC-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 124535 0.66 0.805168
Target:  5'- gCUGUCCuCCaGC-GCCaGCUUGCGCAcguACg -3'
miRNA:   3'- gGACAGG-GG-CGcCGG-CGGACGUGU---UG- -5'
13956 5' -61.4 NC_003521.1 + 148105 0.66 0.805168
Target:  5'- gCCUGcaCCCC-CGGCUGCacgGCACcguGCa -3'
miRNA:   3'- -GGACa-GGGGcGCCGGCGga-CGUGu--UG- -5'
13956 5' -61.4 NC_003521.1 + 61356 0.66 0.805168
Target:  5'- aCCUG-CCCa-CGGCCcgcuuCCUGCAaCAGCu -3'
miRNA:   3'- -GGACaGGGgcGCCGGc----GGACGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 56250 0.66 0.805168
Target:  5'- gCCgugGaCCggCUGCGGCC-CCUGCACAucgGCg -3'
miRNA:   3'- -GGa--CaGG--GGCGCCGGcGGACGUGU---UG- -5'
13956 5' -61.4 NC_003521.1 + 34744 0.66 0.805168
Target:  5'- cUCUGcUUCCGCGaGCUgcugGCCUGCgGCGACg -3'
miRNA:   3'- -GGACaGGGGCGC-CGG----CGGACG-UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 181839 0.66 0.796799
Target:  5'- --cGUCCCCcuccucuaGCGGCugauuCGCCacGCACGACc -3'
miRNA:   3'- ggaCAGGGG--------CGCCG-----GCGGa-CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 34611 0.66 0.796799
Target:  5'- aCCUGggCCUCaCGGCCuccgcCCUGCGCcGCu -3'
miRNA:   3'- -GGACa-GGGGcGCCGGc----GGACGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 187571 0.66 0.796799
Target:  5'- gUUGUCCgaCGCGGCCGCucccaccgggCUGC-CGAa -3'
miRNA:   3'- gGACAGGg-GCGCCGGCG----------GACGuGUUg -5'
13956 5' -61.4 NC_003521.1 + 149957 0.66 0.796799
Target:  5'- cCCcGUCCCCcuCGGCCGUg-GUcaGCAGCa -3'
miRNA:   3'- -GGaCAGGGGc-GCCGGCGgaCG--UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 83034 0.66 0.796799
Target:  5'- cCCUGUgCUCCaCGGcCCGCCggucGCGCGu- -3'
miRNA:   3'- -GGACA-GGGGcGCC-GGCGGa---CGUGUug -5'
13956 5' -61.4 NC_003521.1 + 138057 0.66 0.796799
Target:  5'- --gGUCgCCCGCGaCCGCCgcGgACAGCu -3'
miRNA:   3'- ggaCAG-GGGCGCcGGCGGa-CgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 104179 0.66 0.794263
Target:  5'- cUCUGUCgccgccgccccgcgCCCGUGGCCGauuacgugCUGCuGCAGCc -3'
miRNA:   3'- -GGACAG--------------GGGCGCCGGCg-------GACG-UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 54036 0.66 0.788301
Target:  5'- uCUUGcCCCCGCcGCCGCCacCACcGCc -3'
miRNA:   3'- -GGACaGGGGCGcCGGCGGacGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 151585 0.66 0.788301
Target:  5'- cCCUcGgacgccaCCCGCcuGGCCGCCuUGCGCGc- -3'
miRNA:   3'- -GGA-Cag-----GGGCG--CCGGCGG-ACGUGUug -5'
13956 5' -61.4 NC_003521.1 + 206880 0.66 0.788301
Target:  5'- gCUGcUCgCCGC-GCaCGCC-GCACAGCa -3'
miRNA:   3'- gGAC-AGgGGCGcCG-GCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 28289 0.66 0.788301
Target:  5'- cCCgcUCCCCGCGGCgUGCUggaggaGgACAGCg -3'
miRNA:   3'- -GGacAGGGGCGCCG-GCGGa-----CgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 115512 0.66 0.788301
Target:  5'- gCUGcCCCCGaccaCGGCgGC--GCACAACa -3'
miRNA:   3'- gGACaGGGGC----GCCGgCGgaCGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.