miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 47683 0.66 0.956053
Target:  5'- gCCCUGGCC-CgaGCGAuGCuACAUCc-- -3'
miRNA:   3'- -GGGACCGGcGgaCGUU-CG-UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 168880 0.66 0.956053
Target:  5'- uCCCUGGCgGaCUUGCGaaugAGCgACGUCc-- -3'
miRNA:   3'- -GGGACCGgC-GGACGU----UCG-UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 66659 0.66 0.956053
Target:  5'- uUCgUGcGCgGCCUGCAGGCccuggaGCGUCa-- -3'
miRNA:   3'- -GGgAC-CGgCGGACGUUCG------UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 76608 0.66 0.956053
Target:  5'- aCCUGGugcgcaagaCgGCCUGCGAGUuCGUCa-- -3'
miRNA:   3'- gGGACC---------GgCGGACGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 134504 0.66 0.956053
Target:  5'- aCCCUGGCCGaggGCG-GCGCGggcagCUa- -3'
miRNA:   3'- -GGGACCGGCggaCGUuCGUGUa----GAac -5'
13957 3' -56.2 NC_003521.1 + 114236 0.66 0.956053
Target:  5'- gCCCggccGGCCGCCUGCc-GUcUGUCUg- -3'
miRNA:   3'- -GGGa---CCGGCGGACGuuCGuGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 196313 0.66 0.955679
Target:  5'- cCCCUGcGCCGCCugacgacggcggcUGCAgcucgauuuccAGCGCGUg--- -3'
miRNA:   3'- -GGGAC-CGGCGG-------------ACGU-----------UCGUGUAgaac -5'
13957 3' -56.2 NC_003521.1 + 236843 0.66 0.952604
Target:  5'- -gCUGGCUGCCgugagauggcacacgGCGAGCACGa---- -3'
miRNA:   3'- ggGACCGGCGGa--------------CGUUCGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 226898 0.66 0.952209
Target:  5'- ---aGGCCGCgaGCAAGCugGUgUg- -3'
miRNA:   3'- gggaCCGGCGgaCGUUCGugUAgAac -5'
13957 3' -56.2 NC_003521.1 + 217592 0.66 0.952209
Target:  5'- cCCCgGGuCCGCCccggaccaGCAGGgGCGUCUc- -3'
miRNA:   3'- -GGGaCC-GGCGGa-------CGUUCgUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 214617 0.66 0.952209
Target:  5'- gCCUGGgagcaCCGCCUGCGcgcucucuGGCGCGaugcgcUCUUc -3'
miRNA:   3'- gGGACC-----GGCGGACGU--------UCGUGU------AGAAc -5'
13957 3' -56.2 NC_003521.1 + 45882 0.66 0.952209
Target:  5'- --gUGGCCGUCUGCGucGGCGCugauGUCg-- -3'
miRNA:   3'- gggACCGGCGGACGU--UCGUG----UAGaac -5'
13957 3' -56.2 NC_003521.1 + 189397 0.66 0.951813
Target:  5'- aCCCcGGuacuccacuuacuCCGCCUGCAGGUAUcUCa-- -3'
miRNA:   3'- -GGGaCC-------------GGCGGACGUUCGUGuAGaac -5'
13957 3' -56.2 NC_003521.1 + 102337 0.66 0.948562
Target:  5'- gCgUGGgCGCCgacgccgggguggcgGCAGGCGC-UCUUGa -3'
miRNA:   3'- gGgACCgGCGGa--------------CGUUCGUGuAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 87925 0.66 0.948146
Target:  5'- -gCUGGCCGCCgcgcCGGGCAUGcUCUUc -3'
miRNA:   3'- ggGACCGGCGGac--GUUCGUGU-AGAAc -5'
13957 3' -56.2 NC_003521.1 + 149451 0.66 0.948146
Target:  5'- uCCUcgUGGCCGCCggugGCGAcGCGCGc---- -3'
miRNA:   3'- -GGG--ACCGGCGGa---CGUU-CGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 43750 0.66 0.948146
Target:  5'- -gUUGGCCGCCgcgGCcAGCACGg---- -3'
miRNA:   3'- ggGACCGGCGGa--CGuUCGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 145239 0.66 0.948146
Target:  5'- gCCUucgugagcGGCUGCCUGCAgGGCGCcUCc-- -3'
miRNA:   3'- gGGA--------CCGGCGGACGU-UCGUGuAGaac -5'
13957 3' -56.2 NC_003521.1 + 155823 0.66 0.948146
Target:  5'- cUCCUGcGCCGgUcGCAGGCGCucCUUGa -3'
miRNA:   3'- -GGGAC-CGGCgGaCGUUCGUGuaGAAC- -5'
13957 3' -56.2 NC_003521.1 + 101170 0.66 0.94386
Target:  5'- uCCCUcuccucagacGGCguccgCGCCcgGCGGGCGgAUCUUGa -3'
miRNA:   3'- -GGGA----------CCG-----GCGGa-CGUUCGUgUAGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.