Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13957 | 3' | -56.2 | NC_003521.1 | + | 47683 | 0.66 | 0.956053 |
Target: 5'- gCCCUGGCC-CgaGCGAuGCuACAUCc-- -3' miRNA: 3'- -GGGACCGGcGgaCGUU-CG-UGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 168880 | 0.66 | 0.956053 |
Target: 5'- uCCCUGGCgGaCUUGCGaaugAGCgACGUCc-- -3' miRNA: 3'- -GGGACCGgC-GGACGU----UCG-UGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 66659 | 0.66 | 0.956053 |
Target: 5'- uUCgUGcGCgGCCUGCAGGCccuggaGCGUCa-- -3' miRNA: 3'- -GGgAC-CGgCGGACGUUCG------UGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 76608 | 0.66 | 0.956053 |
Target: 5'- aCCUGGugcgcaagaCgGCCUGCGAGUuCGUCa-- -3' miRNA: 3'- gGGACC---------GgCGGACGUUCGuGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 134504 | 0.66 | 0.956053 |
Target: 5'- aCCCUGGCCGaggGCG-GCGCGggcagCUa- -3' miRNA: 3'- -GGGACCGGCggaCGUuCGUGUa----GAac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 114236 | 0.66 | 0.956053 |
Target: 5'- gCCCggccGGCCGCCUGCc-GUcUGUCUg- -3' miRNA: 3'- -GGGa---CCGGCGGACGuuCGuGUAGAac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 196313 | 0.66 | 0.955679 |
Target: 5'- cCCCUGcGCCGCCugacgacggcggcUGCAgcucgauuuccAGCGCGUg--- -3' miRNA: 3'- -GGGAC-CGGCGG-------------ACGU-----------UCGUGUAgaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 236843 | 0.66 | 0.952604 |
Target: 5'- -gCUGGCUGCCgugagauggcacacgGCGAGCACGa---- -3' miRNA: 3'- ggGACCGGCGGa--------------CGUUCGUGUagaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 226898 | 0.66 | 0.952209 |
Target: 5'- ---aGGCCGCgaGCAAGCugGUgUg- -3' miRNA: 3'- gggaCCGGCGgaCGUUCGugUAgAac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 217592 | 0.66 | 0.952209 |
Target: 5'- cCCCgGGuCCGCCccggaccaGCAGGgGCGUCUc- -3' miRNA: 3'- -GGGaCC-GGCGGa-------CGUUCgUGUAGAac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 214617 | 0.66 | 0.952209 |
Target: 5'- gCCUGGgagcaCCGCCUGCGcgcucucuGGCGCGaugcgcUCUUc -3' miRNA: 3'- gGGACC-----GGCGGACGU--------UCGUGU------AGAAc -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 45882 | 0.66 | 0.952209 |
Target: 5'- --gUGGCCGUCUGCGucGGCGCugauGUCg-- -3' miRNA: 3'- gggACCGGCGGACGU--UCGUG----UAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 189397 | 0.66 | 0.951813 |
Target: 5'- aCCCcGGuacuccacuuacuCCGCCUGCAGGUAUcUCa-- -3' miRNA: 3'- -GGGaCC-------------GGCGGACGUUCGUGuAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 102337 | 0.66 | 0.948562 |
Target: 5'- gCgUGGgCGCCgacgccgggguggcgGCAGGCGC-UCUUGa -3' miRNA: 3'- gGgACCgGCGGa--------------CGUUCGUGuAGAAC- -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 87925 | 0.66 | 0.948146 |
Target: 5'- -gCUGGCCGCCgcgcCGGGCAUGcUCUUc -3' miRNA: 3'- ggGACCGGCGGac--GUUCGUGU-AGAAc -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 149451 | 0.66 | 0.948146 |
Target: 5'- uCCUcgUGGCCGCCggugGCGAcGCGCGc---- -3' miRNA: 3'- -GGG--ACCGGCGGa---CGUU-CGUGUagaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 43750 | 0.66 | 0.948146 |
Target: 5'- -gUUGGCCGCCgcgGCcAGCACGg---- -3' miRNA: 3'- ggGACCGGCGGa--CGuUCGUGUagaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 145239 | 0.66 | 0.948146 |
Target: 5'- gCCUucgugagcGGCUGCCUGCAgGGCGCcUCc-- -3' miRNA: 3'- gGGA--------CCGGCGGACGU-UCGUGuAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 155823 | 0.66 | 0.948146 |
Target: 5'- cUCCUGcGCCGgUcGCAGGCGCucCUUGa -3' miRNA: 3'- -GGGAC-CGGCgGaCGUUCGUGuaGAAC- -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 101170 | 0.66 | 0.94386 |
Target: 5'- uCCCUcuccucagacGGCguccgCGCCcgGCGGGCGgAUCUUGa -3' miRNA: 3'- -GGGA----------CCG-----GCGGa-CGUUCGUgUAGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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