miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 113972 0.65 0.98763
Target:  5'- aGUGGAagagcagcGCGUcGUGCaccuccaGGCGGcGCAGAUCg -3'
miRNA:   3'- cCGCCU--------UGUA-CAUG-------UCGCC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 92613 0.65 0.98763
Target:  5'- gGGCaGGACGgaggGUuccgggaGCgaGGCGGGCGGAUg -3'
miRNA:   3'- -CCGcCUUGUa---CA-------UG--UCGCCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 133360 0.65 0.987332
Target:  5'- cGUGGAgaucagcacgguccGCcgGcACAGCGcGGCGGuCCg -3'
miRNA:   3'- cCGCCU--------------UGuaCaUGUCGC-CCGUCuGG- -5'
13957 5' -54.4 NC_003521.1 + 217439 0.66 0.986248
Target:  5'- --aGGAACAcgGUGCucuccagguGCGGGaAGGCCa -3'
miRNA:   3'- ccgCCUUGUa-CAUGu--------CGCCCgUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 162608 0.66 0.986248
Target:  5'- cGGCGcGcGACGUGacuuaccuCGGaCGGGCcGACCg -3'
miRNA:   3'- -CCGC-C-UUGUACau------GUC-GCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 71647 0.66 0.986248
Target:  5'- cGCGGAcgacgGCGUcGgcgGCGGCGGGUucgucGCCa -3'
miRNA:   3'- cCGCCU-----UGUA-Ca--UGUCGCCCGuc---UGG- -5'
13957 5' -54.4 NC_003521.1 + 224520 0.66 0.986248
Target:  5'- gGGCGcGcGCcugcauuucaccAUGUucgACAGCGGuGUGGACCg -3'
miRNA:   3'- -CCGC-CuUG------------UACA---UGUCGCC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 145903 0.66 0.986248
Target:  5'- cGGCgGGAGCA---GCGGCGGuucGCAaacGGCCu -3'
miRNA:   3'- -CCG-CCUUGUacaUGUCGCC---CGU---CUGG- -5'
13957 5' -54.4 NC_003521.1 + 143546 0.66 0.986248
Target:  5'- aGGCGcucGAACAUGcGCGggucGCaGGuCAGGCCg -3'
miRNA:   3'- -CCGC---CUUGUACaUGU----CGcCC-GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 192445 0.66 0.986248
Target:  5'- aGGagaGGGGCAUG-GCGGCGGcGcCGGuuuCCa -3'
miRNA:   3'- -CCg--CCUUGUACaUGUCGCC-C-GUCu--GG- -5'
13957 5' -54.4 NC_003521.1 + 137949 0.66 0.986248
Target:  5'- cGGCGGuGC---UGCAGCaccaGGCGGAUCu -3'
miRNA:   3'- -CCGCCuUGuacAUGUCGc---CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 90292 0.66 0.986248
Target:  5'- gGGCGcGAGCcgc--CAGgGGGCgcuGGACCg -3'
miRNA:   3'- -CCGC-CUUGuacauGUCgCCCG---UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 35197 0.66 0.986248
Target:  5'- cGGacccaGGGACAggggGCGcGCGGGuCGGAUCg -3'
miRNA:   3'- -CCg----CCUUGUaca-UGU-CGCCC-GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 215015 0.66 0.986248
Target:  5'- aGGaGGAAgAggagACGGCGGcGCuGACCg -3'
miRNA:   3'- -CCgCCUUgUaca-UGUCGCC-CGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 166867 0.66 0.986248
Target:  5'- cGGCGGGcGCAggucGUACAucaaguccGCGGGCGcGCg -3'
miRNA:   3'- -CCGCCU-UGUa---CAUGU--------CGCCCGUcUGg -5'
13957 5' -54.4 NC_003521.1 + 105840 0.66 0.986248
Target:  5'- cGGCGGcGACGac-ACGGCGG-CGGACg -3'
miRNA:   3'- -CCGCC-UUGUacaUGUCGCCcGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 113910 0.66 0.986248
Target:  5'- uGCGcGAACAUGUACucGGCcacgGGGUuGACg -3'
miRNA:   3'- cCGC-CUUGUACAUG--UCG----CCCGuCUGg -5'
13957 5' -54.4 NC_003521.1 + 221884 0.66 0.986248
Target:  5'- gGGUaGGGCGUGUGgGGCGGauugccggcgcGCGGcGCCa -3'
miRNA:   3'- -CCGcCUUGUACAUgUCGCC-----------CGUC-UGG- -5'
13957 5' -54.4 NC_003521.1 + 105694 0.66 0.986087
Target:  5'- gGGUGGcugcccaccAGCAgGUaggcgaaGCGGCGGGUggugaAGACCa -3'
miRNA:   3'- -CCGCC---------UUGUaCA-------UGUCGCCCG-----UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 103850 0.66 0.984576
Target:  5'- cGUGGAggaguACGUGcGCAgcuucugcGCGGGC-GACCu -3'
miRNA:   3'- cCGCCU-----UGUACaUGU--------CGCCCGuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.