miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 233725 0.66 0.999262
Target:  5'- gCCuGgAGAAGGAGgacGCCGcCGCCgcgUCUg -3'
miRNA:   3'- -GGuCgUCUUCUUC---UGGUaGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 223271 0.66 0.999262
Target:  5'- aCCGGCGGAcGAcGACCcccacCGCCauaCCa -3'
miRNA:   3'- -GGUCGUCUuCUuCUGGua---GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 94363 0.66 0.999262
Target:  5'- -aGGgGGGAGggGuuguuGCgCGUCGCCU-CCg -3'
miRNA:   3'- ggUCgUCUUCuuC-----UG-GUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 128048 0.66 0.999262
Target:  5'- gCGGUAGAAGu-GGCCGacgCGCCgcgcgaugCCg -3'
miRNA:   3'- gGUCGUCUUCuuCUGGUa--GCGGaa------GG- -5'
13958 3' -50.9 NC_003521.1 + 84888 0.66 0.999262
Target:  5'- uCCGGguGGcgcgAGuAGGCCGUcagCGCCcggUCCa -3'
miRNA:   3'- -GGUCguCU----UCuUCUGGUA---GCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 196046 0.66 0.999262
Target:  5'- gUCGGCcuAGGGccAGcACCGgcCGCCUUCCg -3'
miRNA:   3'- -GGUCGucUUCU--UC-UGGUa-GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 80594 0.66 0.999262
Target:  5'- gCGGCAGcGGGuuGACCAccUUGUCcUCCa -3'
miRNA:   3'- gGUCGUC-UUCuuCUGGU--AGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 100779 0.66 0.999262
Target:  5'- gUAGCGcGAGGAGGACgAacagaagagggUCGCCUgggCUg -3'
miRNA:   3'- gGUCGU-CUUCUUCUGgU-----------AGCGGAa--GG- -5'
13958 3' -50.9 NC_003521.1 + 70864 0.66 0.999247
Target:  5'- cCCAGgAGGAGAGcaacgacGACaUAUCGCCacaCCa -3'
miRNA:   3'- -GGUCgUCUUCUU-------CUG-GUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 166441 0.66 0.999101
Target:  5'- aCguGUAGAucGAGGgcgaGCCGUCGCCgcacuggCCg -3'
miRNA:   3'- -GguCGUCUu-CUUC----UGGUAGCGGaa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 32156 0.66 0.999101
Target:  5'- gCGGCGGAAGgcG-CCcgCGUUgUUCCa -3'
miRNA:   3'- gGUCGUCUUCuuCuGGuaGCGG-AAGG- -5'
13958 3' -50.9 NC_003521.1 + 163970 0.66 0.999101
Target:  5'- --cGCcGAAGAuGGCgGUCGCCgggCCu -3'
miRNA:   3'- gguCGuCUUCUuCUGgUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 20685 0.66 0.999101
Target:  5'- gCGGC-GAAGAAGACagcgaacCGCCcgCCa -3'
miRNA:   3'- gGUCGuCUUCUUCUGgua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 141015 0.66 0.999101
Target:  5'- cCCAGCAcguGGAGGCCGUacugCGCCa--- -3'
miRNA:   3'- -GGUCGUcuuCUUCUGGUA----GCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 215516 0.66 0.999101
Target:  5'- uCCAGCuGuuGgcGGCC-UCGCuCUUCa -3'
miRNA:   3'- -GGUCGuCuuCuuCUGGuAGCG-GAAGg -5'
13958 3' -50.9 NC_003521.1 + 129837 0.66 0.999101
Target:  5'- gCGGCGcGgcGGAGcaGCCAUCGUCgggCCc -3'
miRNA:   3'- gGUCGU-CuuCUUC--UGGUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 124947 0.66 0.999101
Target:  5'- aCCAGCua---AAGACCAUCaCCUaCCg -3'
miRNA:   3'- -GGUCGucuucUUCUGGUAGcGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 211458 0.66 0.999084
Target:  5'- uCCGGgacuccuCAGAGGAcgAGACCGagcgcggCGCCU-CCg -3'
miRNA:   3'- -GGUC-------GUCUUCU--UCUGGUa------GCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 212727 0.66 0.998911
Target:  5'- aCCAGCAuGcAGAGGAUgGUgGCCa-CCa -3'
miRNA:   3'- -GGUCGU-CuUCUUCUGgUAgCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 77320 0.66 0.998911
Target:  5'- -gAGCAGAuggcccucaAGguGACCugcaaCGCCUUCUa -3'
miRNA:   3'- ggUCGUCU---------UCuuCUGGua---GCGGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.