Results 1 - 20 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13958 | 3' | -50.9 | NC_003521.1 | + | 233725 | 0.66 | 0.999262 |
Target: 5'- gCCuGgAGAAGGAGgacGCCGcCGCCgcgUCUg -3' miRNA: 3'- -GGuCgUCUUCUUC---UGGUaGCGGa--AGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 223271 | 0.66 | 0.999262 |
Target: 5'- aCCGGCGGAcGAcGACCcccacCGCCauaCCa -3' miRNA: 3'- -GGUCGUCUuCUuCUGGua---GCGGaa-GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 94363 | 0.66 | 0.999262 |
Target: 5'- -aGGgGGGAGggGuuguuGCgCGUCGCCU-CCg -3' miRNA: 3'- ggUCgUCUUCuuC-----UG-GUAGCGGAaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 128048 | 0.66 | 0.999262 |
Target: 5'- gCGGUAGAAGu-GGCCGacgCGCCgcgcgaugCCg -3' miRNA: 3'- gGUCGUCUUCuuCUGGUa--GCGGaa------GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 84888 | 0.66 | 0.999262 |
Target: 5'- uCCGGguGGcgcgAGuAGGCCGUcagCGCCcggUCCa -3' miRNA: 3'- -GGUCguCU----UCuUCUGGUA---GCGGa--AGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 196046 | 0.66 | 0.999262 |
Target: 5'- gUCGGCcuAGGGccAGcACCGgcCGCCUUCCg -3' miRNA: 3'- -GGUCGucUUCU--UC-UGGUa-GCGGAAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 80594 | 0.66 | 0.999262 |
Target: 5'- gCGGCAGcGGGuuGACCAccUUGUCcUCCa -3' miRNA: 3'- gGUCGUC-UUCuuCUGGU--AGCGGaAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 100779 | 0.66 | 0.999262 |
Target: 5'- gUAGCGcGAGGAGGACgAacagaagagggUCGCCUgggCUg -3' miRNA: 3'- gGUCGU-CUUCUUCUGgU-----------AGCGGAa--GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 70864 | 0.66 | 0.999247 |
Target: 5'- cCCAGgAGGAGAGcaacgacGACaUAUCGCCacaCCa -3' miRNA: 3'- -GGUCgUCUUCUU-------CUG-GUAGCGGaa-GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 166441 | 0.66 | 0.999101 |
Target: 5'- aCguGUAGAucGAGGgcgaGCCGUCGCCgcacuggCCg -3' miRNA: 3'- -GguCGUCUu-CUUC----UGGUAGCGGaa-----GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 32156 | 0.66 | 0.999101 |
Target: 5'- gCGGCGGAAGgcG-CCcgCGUUgUUCCa -3' miRNA: 3'- gGUCGUCUUCuuCuGGuaGCGG-AAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 163970 | 0.66 | 0.999101 |
Target: 5'- --cGCcGAAGAuGGCgGUCGCCgggCCu -3' miRNA: 3'- gguCGuCUUCUuCUGgUAGCGGaa-GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 20685 | 0.66 | 0.999101 |
Target: 5'- gCGGC-GAAGAAGACagcgaacCGCCcgCCa -3' miRNA: 3'- gGUCGuCUUCUUCUGgua----GCGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 141015 | 0.66 | 0.999101 |
Target: 5'- cCCAGCAcguGGAGGCCGUacugCGCCa--- -3' miRNA: 3'- -GGUCGUcuuCUUCUGGUA----GCGGaagg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 215516 | 0.66 | 0.999101 |
Target: 5'- uCCAGCuGuuGgcGGCC-UCGCuCUUCa -3' miRNA: 3'- -GGUCGuCuuCuuCUGGuAGCG-GAAGg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 129837 | 0.66 | 0.999101 |
Target: 5'- gCGGCGcGgcGGAGcaGCCAUCGUCgggCCc -3' miRNA: 3'- gGUCGU-CuuCUUC--UGGUAGCGGaa-GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 124947 | 0.66 | 0.999101 |
Target: 5'- aCCAGCua---AAGACCAUCaCCUaCCg -3' miRNA: 3'- -GGUCGucuucUUCUGGUAGcGGAaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 211458 | 0.66 | 0.999084 |
Target: 5'- uCCGGgacuccuCAGAGGAcgAGACCGagcgcggCGCCU-CCg -3' miRNA: 3'- -GGUC-------GUCUUCU--UCUGGUa------GCGGAaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 212727 | 0.66 | 0.998911 |
Target: 5'- aCCAGCAuGcAGAGGAUgGUgGCCa-CCa -3' miRNA: 3'- -GGUCGU-CuUCUUCUGgUAgCGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 77320 | 0.66 | 0.998911 |
Target: 5'- -gAGCAGAuggcccucaAGguGACCugcaaCGCCUUCUa -3' miRNA: 3'- ggUCGUCU---------UCuuCUGGua---GCGGAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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