miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 201557 0.66 0.970005
Target:  5'- --cGCGGCGaGAGCUGGcgcaggucgguggccCCGACGCCGg -3'
miRNA:   3'- gucCGUUGUcCUUGACU---------------GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 239758 0.66 0.970005
Target:  5'- --cGCGGCGaGAGCUGGcgcaggucgguggccCCGACGCCGg -3'
miRNA:   3'- gucCGUUGUcCUUGACU---------------GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 117060 0.66 0.968844
Target:  5'- gAGGCGGCcgcGGAGCcGGCgGucACGCCGu -3'
miRNA:   3'- gUCCGUUGu--CCUUGaCUGgC--UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 208069 0.66 0.968844
Target:  5'- uCGGGCGACGGcuucgaccgcGAGCUGuaGCCGuCGuCCGg -3'
miRNA:   3'- -GUCCGUUGUC----------CUUGAC--UGGCuGC-GGU- -5'
13962 3' -55.5 NC_003521.1 + 204490 0.66 0.968844
Target:  5'- -uGGCGGCGGG---UGGCCGACGaCUc -3'
miRNA:   3'- guCCGUUGUCCuugACUGGCUGC-GGu -5'
13962 3' -55.5 NC_003521.1 + 163943 0.66 0.968844
Target:  5'- gAGGCgAGgAGGAGuCUcGGCCGcggACGCCGa -3'
miRNA:   3'- gUCCG-UUgUCCUU-GA-CUGGC---UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 126238 0.66 0.968844
Target:  5'- aAGGCggUGuGcGAACUGguGCUGACGCCc -3'
miRNA:   3'- gUCCGuuGU-C-CUUGAC--UGGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 168971 0.66 0.968548
Target:  5'- -cGGCGGCGGuGGAgauucacCUGACCGAggacggccUGCCAc -3'
miRNA:   3'- guCCGUUGUC-CUU-------GACUGGCU--------GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 6505 0.66 0.966115
Target:  5'- -cGGCGuccGCGGGAGCgccggucuccauucgGACCGcCGUCAu -3'
miRNA:   3'- guCCGU---UGUCCUUGa--------------CUGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 187298 0.66 0.965802
Target:  5'- -cGGCAGCccgguGGGAGC-GGCCG-CGUCGg -3'
miRNA:   3'- guCCGUUG-----UCCUUGaCUGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 103314 0.66 0.965802
Target:  5'- -cGGUAcuccaGCAGGcGCUGACgCGccaGCGCCGu -3'
miRNA:   3'- guCCGU-----UGUCCuUGACUG-GC---UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 65345 0.66 0.965802
Target:  5'- cCAGuGCAuGCAGGAcguGCUGuCCGgggagacggcGCGCCGc -3'
miRNA:   3'- -GUC-CGU-UGUCCU---UGACuGGC----------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 83850 0.66 0.965802
Target:  5'- aAGGCc-CAGGAgcgGCUGACuaccaagcucauCGACGUCAa -3'
miRNA:   3'- gUCCGuuGUCCU---UGACUG------------GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 155424 0.66 0.965802
Target:  5'- cCAGG-AGCuguGcGAGCUGGCCGAC-CCGc -3'
miRNA:   3'- -GUCCgUUGu--C-CUUGACUGGCUGcGGU- -5'
13962 3' -55.5 NC_003521.1 + 118571 0.66 0.965802
Target:  5'- -cGGCGGCGGGca--GGCCGGCGgCGg -3'
miRNA:   3'- guCCGUUGUCCuugaCUGGCUGCgGU- -5'
13962 3' -55.5 NC_003521.1 + 197012 0.66 0.965802
Target:  5'- gGGGCAGCAG--ACgGugCaGGCGCCGc -3'
miRNA:   3'- gUCCGUUGUCcuUGaCugG-CUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 211406 0.66 0.965802
Target:  5'- uGGGCGACuGGAggaugauccGCUGcguccUCGGCGCCu -3'
miRNA:   3'- gUCCGUUGuCCU---------UGACu----GGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 117670 0.66 0.965802
Target:  5'- gCGGGCAcggcaccgacgGCGGGAuagGACggaGGCGCCGu -3'
miRNA:   3'- -GUCCGU-----------UGUCCUugaCUGg--CUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 229402 0.66 0.962557
Target:  5'- aCGGGUGGCGGGuACgggGACaCGGCGUa- -3'
miRNA:   3'- -GUCCGUUGUCCuUGa--CUG-GCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 33436 0.66 0.962557
Target:  5'- -cGGUucguGGAACgUGGCCGAgGCCGa -3'
miRNA:   3'- guCCGuuguCCUUG-ACUGGCUgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.