Results 1 - 20 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13962 | 3' | -55.5 | NC_003521.1 | + | 201557 | 0.66 | 0.970005 |
Target: 5'- --cGCGGCGaGAGCUGGcgcaggucgguggccCCGACGCCGg -3' miRNA: 3'- gucCGUUGUcCUUGACU---------------GGCUGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 239758 | 0.66 | 0.970005 |
Target: 5'- --cGCGGCGaGAGCUGGcgcaggucgguggccCCGACGCCGg -3' miRNA: 3'- gucCGUUGUcCUUGACU---------------GGCUGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 117060 | 0.66 | 0.968844 |
Target: 5'- gAGGCGGCcgcGGAGCcGGCgGucACGCCGu -3' miRNA: 3'- gUCCGUUGu--CCUUGaCUGgC--UGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 204490 | 0.66 | 0.968844 |
Target: 5'- -uGGCGGCGGG---UGGCCGACGaCUc -3' miRNA: 3'- guCCGUUGUCCuugACUGGCUGC-GGu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 126238 | 0.66 | 0.968844 |
Target: 5'- aAGGCggUGuGcGAACUGguGCUGACGCCc -3' miRNA: 3'- gUCCGuuGU-C-CUUGAC--UGGCUGCGGu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 163943 | 0.66 | 0.968844 |
Target: 5'- gAGGCgAGgAGGAGuCUcGGCCGcggACGCCGa -3' miRNA: 3'- gUCCG-UUgUCCUU-GA-CUGGC---UGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 208069 | 0.66 | 0.968844 |
Target: 5'- uCGGGCGACGGcuucgaccgcGAGCUGuaGCCGuCGuCCGg -3' miRNA: 3'- -GUCCGUUGUC----------CUUGAC--UGGCuGC-GGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 168971 | 0.66 | 0.968548 |
Target: 5'- -cGGCGGCGGuGGAgauucacCUGACCGAggacggccUGCCAc -3' miRNA: 3'- guCCGUUGUC-CUU-------GACUGGCU--------GCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 6505 | 0.66 | 0.966115 |
Target: 5'- -cGGCGuccGCGGGAGCgccggucuccauucgGACCGcCGUCAu -3' miRNA: 3'- guCCGU---UGUCCUUGa--------------CUGGCuGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 187298 | 0.66 | 0.965802 |
Target: 5'- -cGGCAGCccgguGGGAGC-GGCCG-CGUCGg -3' miRNA: 3'- guCCGUUG-----UCCUUGaCUGGCuGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 211406 | 0.66 | 0.965802 |
Target: 5'- uGGGCGACuGGAggaugauccGCUGcguccUCGGCGCCu -3' miRNA: 3'- gUCCGUUGuCCU---------UGACu----GGCUGCGGu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 118571 | 0.66 | 0.965802 |
Target: 5'- -cGGCGGCGGGca--GGCCGGCGgCGg -3' miRNA: 3'- guCCGUUGUCCuugaCUGGCUGCgGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 83850 | 0.66 | 0.965802 |
Target: 5'- aAGGCc-CAGGAgcgGCUGACuaccaagcucauCGACGUCAa -3' miRNA: 3'- gUCCGuuGUCCU---UGACUG------------GCUGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 155424 | 0.66 | 0.965802 |
Target: 5'- cCAGG-AGCuguGcGAGCUGGCCGAC-CCGc -3' miRNA: 3'- -GUCCgUUGu--C-CUUGACUGGCUGcGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 65345 | 0.66 | 0.965802 |
Target: 5'- cCAGuGCAuGCAGGAcguGCUGuCCGgggagacggcGCGCCGc -3' miRNA: 3'- -GUC-CGU-UGUCCU---UGACuGGC----------UGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 117670 | 0.66 | 0.965802 |
Target: 5'- gCGGGCAcggcaccgacgGCGGGAuagGACggaGGCGCCGu -3' miRNA: 3'- -GUCCGU-----------UGUCCUugaCUGg--CUGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 103314 | 0.66 | 0.965802 |
Target: 5'- -cGGUAcuccaGCAGGcGCUGACgCGccaGCGCCGu -3' miRNA: 3'- guCCGU-----UGUCCuUGACUG-GC---UGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 197012 | 0.66 | 0.965802 |
Target: 5'- gGGGCAGCAG--ACgGugCaGGCGCCGc -3' miRNA: 3'- gUCCGUUGUCcuUGaCugG-CUGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 33436 | 0.66 | 0.962557 |
Target: 5'- -cGGUucguGGAACgUGGCCGAgGCCGa -3' miRNA: 3'- guCCGuuguCCUUG-ACUGGCUgCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 229402 | 0.66 | 0.962557 |
Target: 5'- aCGGGUGGCGGGuACgggGACaCGGCGUa- -3' miRNA: 3'- -GUCCGUUGUCCuUGa--CUG-GCUGCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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