miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 153613 0.66 0.799449
Target:  5'- gGUUGGCGcucagcagcuccugcGCCAGCgggugcgUCUCGGUGgaGCg -3'
miRNA:   3'- -CGACCGU---------------UGGUCG-------GGAGCCGCgaCGa -5'
13962 5' -61 NC_003521.1 + 19133 0.66 0.796887
Target:  5'- uGCUcGGCAACgAGaCCCaCGGCGUgGUg -3'
miRNA:   3'- -CGA-CCGUUGgUC-GGGaGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 33555 0.66 0.796887
Target:  5'- cGCcGGCAuguACgAGCUCUCGcaGCuGCUGCa -3'
miRNA:   3'- -CGaCCGU---UGgUCGGGAGC--CG-CGACGa -5'
13962 5' -61 NC_003521.1 + 118267 0.66 0.796887
Target:  5'- cGC-GGUAGCCGGCaCCagCGGCGgUaGCa -3'
miRNA:   3'- -CGaCCGUUGGUCG-GGa-GCCGCgA-CGa -5'
13962 5' -61 NC_003521.1 + 100541 0.66 0.796887
Target:  5'- aGCUGGgGAuCCGacgacgauacucGCCCUCGGCGUc--- -3'
miRNA:   3'- -CGACCgUU-GGU------------CGGGAGCCGCGacga -5'
13962 5' -61 NC_003521.1 + 166125 0.66 0.796887
Target:  5'- uGCUucagGGCGGCCGGCaggUCGGCGUaGUa -3'
miRNA:   3'- -CGA----CCGUUGGUCGgg-AGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 62086 0.66 0.79603
Target:  5'- --cGuGCGACCAGUCCaaccgggaacgcuUCGGCGCccGCg -3'
miRNA:   3'- cgaC-CGUUGGUCGGG-------------AGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 87910 0.66 0.795172
Target:  5'- gGCUGcGCcuCCAGCCUgugcgaggccugCGGCGgcacCUGCUg -3'
miRNA:   3'- -CGAC-CGuuGGUCGGGa-----------GCCGC----GACGA- -5'
13962 5' -61 NC_003521.1 + 128098 0.66 0.788259
Target:  5'- gGCUGGC-GCCggGGCCCUUccacgaGCUGCg -3'
miRNA:   3'- -CGACCGuUGG--UCGGGAGccg---CGACGa -5'
13962 5' -61 NC_003521.1 + 150999 0.66 0.788259
Target:  5'- --gGGCAGCCGGCCCa-GGaCGUgGCc -3'
miRNA:   3'- cgaCCGUUGGUCGGGagCC-GCGaCGa -5'
13962 5' -61 NC_003521.1 + 142940 0.66 0.788259
Target:  5'- aGCUGcuGCcGCCGucgcuGCUgaCGGCGCUGCg -3'
miRNA:   3'- -CGAC--CGuUGGU-----CGGgaGCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 195671 0.66 0.788259
Target:  5'- --aGGUAGCCGguGCCCgccgUCGGCGCgGUc -3'
miRNA:   3'- cgaCCGUUGGU--CGGG----AGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 188139 0.66 0.788259
Target:  5'- gGCUGGCAccGCCGacGCUgcCGGUGCcGCUg -3'
miRNA:   3'- -CGACCGU--UGGU--CGGgaGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 74835 0.66 0.788259
Target:  5'- cGCgacGGCGuCCcGCCCUCa-CGCUGCa -3'
miRNA:   3'- -CGa--CCGUuGGuCGGGAGccGCGACGa -5'
13962 5' -61 NC_003521.1 + 37094 0.66 0.787389
Target:  5'- --cGGCAcagcagcGCCGGCCCgUGGCGC-GUg -3'
miRNA:   3'- cgaCCGU-------UGGUCGGGaGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 162434 0.66 0.779504
Target:  5'- cGCUuucGGUuuCCAGUccgCCUCGGCGgUGUUc -3'
miRNA:   3'- -CGA---CCGuuGGUCG---GGAGCCGCgACGA- -5'
13962 5' -61 NC_003521.1 + 127743 0.66 0.779504
Target:  5'- aCUGGUGACgC-GCaUCUCGGCGCUgGCg -3'
miRNA:   3'- cGACCGUUG-GuCG-GGAGCCGCGA-CGa -5'
13962 5' -61 NC_003521.1 + 166884 0.66 0.779504
Target:  5'- aGCUGcuacagggacaGCAGCagcaGGCCgUCGGCGCcGUg -3'
miRNA:   3'- -CGAC-----------CGUUGg---UCGGgAGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 155615 0.66 0.779504
Target:  5'- aGgUGGCGACCGcuGUUCUCGGCgGCgGUg -3'
miRNA:   3'- -CgACCGUUGGU--CGGGAGCCG-CGaCGa -5'
13962 5' -61 NC_003521.1 + 128094 0.66 0.777738
Target:  5'- cGCUGGaagcgcgacuCCAGCa---GGCGCUGCa -3'
miRNA:   3'- -CGACCguu-------GGUCGggagCCGCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.