Results 1 - 20 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13962 | 5' | -61 | NC_003521.1 | + | 153613 | 0.66 | 0.799449 |
Target: 5'- gGUUGGCGcucagcagcuccugcGCCAGCgggugcgUCUCGGUGgaGCg -3' miRNA: 3'- -CGACCGU---------------UGGUCG-------GGAGCCGCgaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 19133 | 0.66 | 0.796887 |
Target: 5'- uGCUcGGCAACgAGaCCCaCGGCGUgGUg -3' miRNA: 3'- -CGA-CCGUUGgUC-GGGaGCCGCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 33555 | 0.66 | 0.796887 |
Target: 5'- cGCcGGCAuguACgAGCUCUCGcaGCuGCUGCa -3' miRNA: 3'- -CGaCCGU---UGgUCGGGAGC--CG-CGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 118267 | 0.66 | 0.796887 |
Target: 5'- cGC-GGUAGCCGGCaCCagCGGCGgUaGCa -3' miRNA: 3'- -CGaCCGUUGGUCG-GGa-GCCGCgA-CGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 100541 | 0.66 | 0.796887 |
Target: 5'- aGCUGGgGAuCCGacgacgauacucGCCCUCGGCGUc--- -3' miRNA: 3'- -CGACCgUU-GGU------------CGGGAGCCGCGacga -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 166125 | 0.66 | 0.796887 |
Target: 5'- uGCUucagGGCGGCCGGCaggUCGGCGUaGUa -3' miRNA: 3'- -CGA----CCGUUGGUCGgg-AGCCGCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 62086 | 0.66 | 0.79603 |
Target: 5'- --cGuGCGACCAGUCCaaccgggaacgcuUCGGCGCccGCg -3' miRNA: 3'- cgaC-CGUUGGUCGGG-------------AGCCGCGa-CGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 87910 | 0.66 | 0.795172 |
Target: 5'- gGCUGcGCcuCCAGCCUgugcgaggccugCGGCGgcacCUGCUg -3' miRNA: 3'- -CGAC-CGuuGGUCGGGa-----------GCCGC----GACGA- -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 128098 | 0.66 | 0.788259 |
Target: 5'- gGCUGGC-GCCggGGCCCUUccacgaGCUGCg -3' miRNA: 3'- -CGACCGuUGG--UCGGGAGccg---CGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 150999 | 0.66 | 0.788259 |
Target: 5'- --gGGCAGCCGGCCCa-GGaCGUgGCc -3' miRNA: 3'- cgaCCGUUGGUCGGGagCC-GCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 142940 | 0.66 | 0.788259 |
Target: 5'- aGCUGcuGCcGCCGucgcuGCUgaCGGCGCUGCg -3' miRNA: 3'- -CGAC--CGuUGGU-----CGGgaGCCGCGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 195671 | 0.66 | 0.788259 |
Target: 5'- --aGGUAGCCGguGCCCgccgUCGGCGCgGUc -3' miRNA: 3'- cgaCCGUUGGU--CGGG----AGCCGCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 188139 | 0.66 | 0.788259 |
Target: 5'- gGCUGGCAccGCCGacGCUgcCGGUGCcGCUg -3' miRNA: 3'- -CGACCGU--UGGU--CGGgaGCCGCGaCGA- -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 74835 | 0.66 | 0.788259 |
Target: 5'- cGCgacGGCGuCCcGCCCUCa-CGCUGCa -3' miRNA: 3'- -CGa--CCGUuGGuCGGGAGccGCGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 37094 | 0.66 | 0.787389 |
Target: 5'- --cGGCAcagcagcGCCGGCCCgUGGCGC-GUg -3' miRNA: 3'- cgaCCGU-------UGGUCGGGaGCCGCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 162434 | 0.66 | 0.779504 |
Target: 5'- cGCUuucGGUuuCCAGUccgCCUCGGCGgUGUUc -3' miRNA: 3'- -CGA---CCGuuGGUCG---GGAGCCGCgACGA- -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 127743 | 0.66 | 0.779504 |
Target: 5'- aCUGGUGACgC-GCaUCUCGGCGCUgGCg -3' miRNA: 3'- cGACCGUUG-GuCG-GGAGCCGCGA-CGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 166884 | 0.66 | 0.779504 |
Target: 5'- aGCUGcuacagggacaGCAGCagcaGGCCgUCGGCGCcGUg -3' miRNA: 3'- -CGAC-----------CGUUGg---UCGGgAGCCGCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 155615 | 0.66 | 0.779504 |
Target: 5'- aGgUGGCGACCGcuGUUCUCGGCgGCgGUg -3' miRNA: 3'- -CgACCGUUGGU--CGGGAGCCG-CGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 128094 | 0.66 | 0.777738 |
Target: 5'- cGCUGGaagcgcgacuCCAGCa---GGCGCUGCa -3' miRNA: 3'- -CGACCguu-------GGUCGggagCCGCGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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