miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 185734 0.66 0.975319
Target:  5'- nGGAGGugAUCG-CCgagcgggugCGCCGgAGCGCc -3'
miRNA:   3'- -CCUCCugUGGUaGGa--------GUGGU-UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 178651 0.66 0.975319
Target:  5'- aGGAgGGugACaGUCC-CAgCAGGUGCGc -3'
miRNA:   3'- -CCU-CCugUGgUAGGaGUgGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 213859 0.66 0.975319
Target:  5'- cGGGGAacuccUACCAcugacguaCC-CGCCGGGCGCGg -3'
miRNA:   3'- cCUCCU-----GUGGUa-------GGaGUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 186980 0.66 0.975319
Target:  5'- cGAGGACGCCGUCg-CGCggaAAGUcaGCGa -3'
miRNA:   3'- cCUCCUGUGGUAGgaGUGg--UUCG--CGC- -5'
13963 5' -55.6 NC_003521.1 + 238449 0.66 0.975319
Target:  5'- aGGAGG-CGCagggcggCCUCGgCGGGCGgGg -3'
miRNA:   3'- -CCUCCuGUGgua----GGAGUgGUUCGCgC- -5'
13963 5' -55.6 NC_003521.1 + 82641 0.66 0.975319
Target:  5'- cGGAGGAgGgCGUCCgCAgCAAGCuaacGCa -3'
miRNA:   3'- -CCUCCUgUgGUAGGaGUgGUUCG----CGc -5'
13963 5' -55.6 NC_003521.1 + 38221 0.66 0.975319
Target:  5'- aGGAGG-CGCagggcggCCUCGgCGGGCGgGg -3'
miRNA:   3'- -CCUCCuGUGgua----GGAGUgGUUCGCgC- -5'
13963 5' -55.6 NC_003521.1 + 61842 0.66 0.972768
Target:  5'- gGGAGGGCGCCG-CggaACCGcGGCGCc -3'
miRNA:   3'- -CCUCCUGUGGUaGgagUGGU-UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 155906 0.66 0.972768
Target:  5'- cGAGGAUACgGcCCUgcuggACCGGGCGCu -3'
miRNA:   3'- cCUCCUGUGgUaGGAg----UGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 206183 0.66 0.972768
Target:  5'- uGGGGGGCu---UUUUCGCCAAGgGCa -3'
miRNA:   3'- -CCUCCUGugguAGGAGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 78165 0.66 0.972768
Target:  5'- cGAGG-CACgAUCCUgguggCGCCGauagAGCGUGg -3'
miRNA:   3'- cCUCCuGUGgUAGGA-----GUGGU----UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 111931 0.66 0.972768
Target:  5'- ---cGACGCCGcCCUCgacuACCuGGCGCGg -3'
miRNA:   3'- ccucCUGUGGUaGGAG----UGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 121599 0.66 0.972768
Target:  5'- cGAGcACACCAgcuggcuggCgCUCACCAccuGGCGCa -3'
miRNA:   3'- cCUCcUGUGGUa--------G-GAGUGGU---UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 228089 0.66 0.972768
Target:  5'- cGAGG-CGCCGgaaaCCUCGuCCAGGCuguuGCGc -3'
miRNA:   3'- cCUCCuGUGGUa---GGAGU-GGUUCG----CGC- -5'
13963 5' -55.6 NC_003521.1 + 216167 0.66 0.972503
Target:  5'- aGGaAGGugACCA-CCagCGCCAggacgaaGGCGCu -3'
miRNA:   3'- -CC-UCCugUGGUaGGa-GUGGU-------UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 155481 0.66 0.970032
Target:  5'- aGAGaGACGCCggCCUgCGgCGGGcCGCGg -3'
miRNA:   3'- cCUC-CUGUGGuaGGA-GUgGUUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 35923 0.66 0.970032
Target:  5'- uGGuGGGCGCCugGUCCUCaACgGGGaCGUa -3'
miRNA:   3'- -CCuCCUGUGG--UAGGAG-UGgUUC-GCGc -5'
13963 5' -55.6 NC_003521.1 + 226893 0.66 0.970032
Target:  5'- cGGGGGCACCAcggcgGCC-AGCGCGg -3'
miRNA:   3'- cCUCCUGUGGUaggagUGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 163087 0.66 0.970032
Target:  5'- cGAGGccgGC-CCGUCCUCgggcGCCA-GCGCc -3'
miRNA:   3'- cCUCC---UGuGGUAGGAG----UGGUuCGCGc -5'
13963 5' -55.6 NC_003521.1 + 29247 0.66 0.970032
Target:  5'- cGGGGACACCG-CCg---CGAGCGUGc -3'
miRNA:   3'- cCUCCUGUGGUaGGagugGUUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.