miRNA display CGI


Results 1 - 20 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 18764 0.66 0.998029
Target:  5'- aCGGGucGCUGcuGCGACGGCugguGCCccCCGCc -3'
miRNA:   3'- -GCCU--UGACu-CGUUGUUG----CGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 204117 0.66 0.998029
Target:  5'- gCGGAGC-GGGUgcucGGCGGCGaCAuCCGCg -3'
miRNA:   3'- -GCCUUGaCUCG----UUGUUGCgGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239042 0.66 0.998029
Target:  5'- cCGGAcCUG-GUcGCGGCGCCGuguuCCGa -3'
miRNA:   3'- -GCCUuGACuCGuUGUUGCGGUu---GGCg -5'
13965 5' -51.8 NC_003521.1 + 65515 0.66 0.998029
Target:  5'- uCGaGcGCUGucAGCuggGCGACGCCGagACCGUg -3'
miRNA:   3'- -GC-CuUGAC--UCGu--UGUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 154650 0.66 0.998029
Target:  5'- --uGAUUG-GCGGCAGCGgCGACCGa -3'
miRNA:   3'- gccUUGACuCGUUGUUGCgGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 75090 0.66 0.998029
Target:  5'- gCGGGACgccgucGCGcuCGGCGCCGuccguCCGCg -3'
miRNA:   3'- -GCCUUGacu---CGUu-GUUGCGGUu----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 17340 0.66 0.998029
Target:  5'- gGGAACgUGGGUcGC--CGCCAGCgGUa -3'
miRNA:   3'- gCCUUG-ACUCGuUGuuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 61417 0.66 0.998029
Target:  5'- aGGGACUGcAGCAugAGCuGC--ACCaGCa -3'
miRNA:   3'- gCCUUGAC-UCGUugUUG-CGguUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 131133 0.66 0.998029
Target:  5'- aGGGACaGcGCGACcccucgGCCGAUCGCa -3'
miRNA:   3'- gCCUUGaCuCGUUGuug---CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 240035 0.66 0.998029
Target:  5'- gCGGGGCgccGGGCggUccucCGCCGAUgGCg -3'
miRNA:   3'- -GCCUUGa--CUCGuuGuu--GCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 186939 0.66 0.998029
Target:  5'- gCGuGACUGucguugcGCAGCAggcacucguacACGCCGGCCGa -3'
miRNA:   3'- -GCcUUGACu------CGUUGU-----------UGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 140989 0.66 0.998029
Target:  5'- -aGAGCUGgcccucuccAGCAACAAgGCCcagcacguggaGGCCGUa -3'
miRNA:   3'- gcCUUGAC---------UCGUUGUUgCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 112128 0.66 0.998029
Target:  5'- aGGGGCUG-GCGGCGugGC--GCUGg -3'
miRNA:   3'- gCCUUGACuCGUUGUugCGguUGGCg -5'
13965 5' -51.8 NC_003521.1 + 202273 0.66 0.998029
Target:  5'- cCGGAcCUG-GUcGCGGCGCCGuguuCCGa -3'
miRNA:   3'- -GCCUuGACuCGuUGUUGCGGUu---GGCg -5'
13965 5' -51.8 NC_003521.1 + 233453 0.66 0.998029
Target:  5'- gGGAACgaccGA-CggUAACGgCGGCCGCc -3'
miRNA:   3'- gCCUUGa---CUcGuuGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 118200 0.66 0.998029
Target:  5'- uCGGGGCcgccGAGCGcGCGGcCGCC-GCCGUc -3'
miRNA:   3'- -GCCUUGa---CUCGU-UGUU-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 214143 0.66 0.998029
Target:  5'- uGGAGuaGAGCAGCAGgGa--GCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGUUgCgguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 201280 0.66 0.998029
Target:  5'- gCGGGGCgccGGGCggUccucCGCCGAUgGCg -3'
miRNA:   3'- -GCCUUGa--CUCGuuGuu--GCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 116759 0.66 0.998029
Target:  5'- aCGuGGCUuGuGCAGCGugGgCCGccGCCGCg -3'
miRNA:   3'- -GCcUUGA-CuCGUUGUugC-GGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 112693 0.66 0.998029
Target:  5'- aGGAGCUccugcuggGGGUGGuCAACGCCcuagagagcguGACCGUc -3'
miRNA:   3'- gCCUUGA--------CUCGUU-GUUGCGG-----------UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.