miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 91922 0.66 0.969779
Target:  5'- aUGCGCCaGG-GAGCcGCgGGCACg- -3'
miRNA:   3'- gACGCGGaCCuCUUGuUGgCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 55295 0.66 0.969779
Target:  5'- -cGCGUCUcucGGAGCcGCCGACGCUg -3'
miRNA:   3'- gaCGCGGAcc-UCUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 40194 0.66 0.969779
Target:  5'- -aGCuGCUggcGGAGGACAuccacaucuacAUCGACGCCUu -3'
miRNA:   3'- gaCG-CGGa--CCUCUUGU-----------UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 132887 0.66 0.969779
Target:  5'- -gGCGCCgccgccgagucUGGAagccguugcGGAC-GCCGACGCCg -3'
miRNA:   3'- gaCGCGG-----------ACCU---------CUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 232171 0.66 0.969779
Target:  5'- -gGCGCg-GGAGAAgAGCCGcUGCCg -3'
miRNA:   3'- gaCGCGgaCCUCUUgUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 70721 0.66 0.969779
Target:  5'- cCUGCGCC-GGAugu--ACCGGCACUUc -3'
miRNA:   3'- -GACGCGGaCCUcuuguUGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 136054 0.66 0.969779
Target:  5'- gUGCGaCCUGGGcAGCGGCUGcGCGCUc -3'
miRNA:   3'- gACGC-GGACCUcUUGUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 155860 0.66 0.969779
Target:  5'- -cGCGCUucgUGGAGAuccuGCAGaagGACACCUu -3'
miRNA:   3'- gaCGCGG---ACCUCU----UGUUgg-CUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 217886 0.66 0.969779
Target:  5'- --aCGCCgaGGAGAugGCGGCCGAgaCGCCc -3'
miRNA:   3'- gacGCGGa-CCUCU--UGUUGGCU--GUGGa -5'
13968 3' -55.5 NC_003521.1 + 34454 0.66 0.969779
Target:  5'- gCUGCggGCCUGGGGGuCGucGCCGcAgGCCa -3'
miRNA:   3'- -GACG--CGGACCUCUuGU--UGGC-UgUGGa -5'
13968 3' -55.5 NC_003521.1 + 57576 0.66 0.969779
Target:  5'- -cGCGCCUucGAGGGCG-CCGGCGgCg -3'
miRNA:   3'- gaCGCGGAc-CUCUUGUuGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 100022 0.66 0.968019
Target:  5'- -aGCGCCUGGucaAGAagccgggccaaaugaGCGGCugggugcgcgaCGACGCCUg -3'
miRNA:   3'- gaCGCGGACC---UCU---------------UGUUG-----------GCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 109974 0.66 0.966806
Target:  5'- cCUGCGCCUGcaguAGGGCGGCCu--GCCg -3'
miRNA:   3'- -GACGCGGACc---UCUUGUUGGcugUGGa -5'
13968 3' -55.5 NC_003521.1 + 77481 0.66 0.966806
Target:  5'- -aGCGUcacgCUGGAGAACGGCau-CACCc -3'
miRNA:   3'- gaCGCG----GACCUCUUGUUGgcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 41873 0.66 0.966806
Target:  5'- -cGCGCCUGGuGccCAACCucCACUg -3'
miRNA:   3'- gaCGCGGACCuCuuGUUGGcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 17102 0.66 0.966806
Target:  5'- cCUGCGCCgGcGAGGACggUCGGuccuCAUCg -3'
miRNA:   3'- -GACGCGGaC-CUCUUGuuGGCU----GUGGa -5'
13968 3' -55.5 NC_003521.1 + 34696 0.66 0.966806
Target:  5'- -aGCGCCuacgUGGAGucGCAcCgCGACGCCc -3'
miRNA:   3'- gaCGCGG----ACCUCu-UGUuG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 233511 0.66 0.963632
Target:  5'- cCUGUGCCUucugcuccuGAGGACccuGCUGAUGCCUg -3'
miRNA:   3'- -GACGCGGAc--------CUCUUGu--UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 231832 0.66 0.963632
Target:  5'- aUGaCGCUgaGGGGGAUGACaaaGGCACCUa -3'
miRNA:   3'- gAC-GCGGa-CCUCUUGUUGg--CUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 204385 0.66 0.963632
Target:  5'- -gGCGCCUGGcccGAGCAgguggaggcgcAgUGGCGCCa -3'
miRNA:   3'- gaCGCGGACCu--CUUGU-----------UgGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.