miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 35024 0.65 0.903224
Target:  5'- gCACCUcAUCGGCguggucuCGUaCGCCGCCUGu -3'
miRNA:   3'- gGUGGA-UGGCCG-------GUAgGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 221338 0.66 0.897794
Target:  5'- aCACCgaGCgGGCCAcCUGC-ACCUGGc -3'
miRNA:   3'- gGUGGa-UGgCCGGUaGGCGgUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 190015 0.66 0.897794
Target:  5'- aCCACCggggacACCGcuGCCAUcaCCGUCGCCg-- -3'
miRNA:   3'- -GGUGGa-----UGGC--CGGUA--GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 112876 0.66 0.897794
Target:  5'- cCCGCg-GCUGGCCgacgacGUCagccgcgagauCGCCGCCUGGg -3'
miRNA:   3'- -GGUGgaUGGCCGG------UAG-----------GCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 153077 0.66 0.897794
Target:  5'- gCCGCCgggGCCcgGGCCGgggcccaccaCGCCGCCgGGc -3'
miRNA:   3'- -GGUGGa--UGG--CCGGUag--------GCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 217676 0.66 0.897794
Target:  5'- gCugC-ACCGGCUucaugCCGCCgcucaGCCUGGc -3'
miRNA:   3'- gGugGaUGGCCGGua---GGCGG-----UGGACU- -5'
13968 5' -59.1 NC_003521.1 + 109980 0.66 0.897794
Target:  5'- cCCACCUGgccuccuuccucUCGGCC-UUCGCCcGCCagGAg -3'
miRNA:   3'- -GGUGGAU------------GGCCGGuAGGCGG-UGGa-CU- -5'
13968 5' -59.1 NC_003521.1 + 69522 0.66 0.897794
Target:  5'- aCCGCUUGCCa--CGUCgGCCACCa-- -3'
miRNA:   3'- -GGUGGAUGGccgGUAGgCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 111897 0.66 0.897794
Target:  5'- gUACCUuCCGcGCCGcCCGCUucgACCUGu -3'
miRNA:   3'- gGUGGAuGGC-CGGUaGGCGG---UGGACu -5'
13968 5' -59.1 NC_003521.1 + 86478 0.66 0.897794
Target:  5'- -gGCC-GCCGGCgugCCGCCGCCc-- -3'
miRNA:   3'- ggUGGaUGGCCGguaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 136158 0.66 0.89718
Target:  5'- aCCACCUGCUGGagcCCAUCgaggagaCGUCGCUcGAc -3'
miRNA:   3'- -GGUGGAUGGCC---GGUAG-------GCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 101334 0.66 0.89718
Target:  5'- gCCGCgUGCCgacggcaggauccGGCCGUCggcgGCCGCCaUGGa -3'
miRNA:   3'- -GGUGgAUGG-------------CCGGUAGg---CGGUGG-ACU- -5'
13968 5' -59.1 NC_003521.1 + 95424 0.66 0.895947
Target:  5'- -gGCCcgGCCGGCCGacUCCuugccgucggcgcgGCCGCCUu- -3'
miRNA:   3'- ggUGGa-UGGCCGGU--AGG--------------CGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 70063 0.66 0.894081
Target:  5'- aCCGCCUGuCgGGCCAgcacguacagcggguUgCCGCagggCACCUGGc -3'
miRNA:   3'- -GGUGGAU-GgCCGGU---------------A-GGCG----GUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 215741 0.66 0.894081
Target:  5'- cCCugCUcCUGGCC-UUCGCCuucguggcucccucgGCCUGGc -3'
miRNA:   3'- -GGugGAuGGCCGGuAGGCGG---------------UGGACU- -5'
13968 5' -59.1 NC_003521.1 + 79589 0.66 0.891565
Target:  5'- gCCGCuaCUGCCGcuGCCG-CCGCCAUCg-- -3'
miRNA:   3'- -GGUG--GAUGGC--CGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 151080 0.66 0.891565
Target:  5'- gCCGC--GCCGGCUG-CCGUCACCg-- -3'
miRNA:   3'- -GGUGgaUGGCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 53473 0.66 0.891565
Target:  5'- aCgGCCUGCCGggcgaGCCGggCCGCgCGCCg-- -3'
miRNA:   3'- -GgUGGAUGGC-----CGGUa-GGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 131585 0.66 0.891565
Target:  5'- -aGCgCUGCaCGGCCAggugaCGCCGCCg-- -3'
miRNA:   3'- ggUG-GAUG-GCCGGUag---GCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 129829 0.66 0.891565
Target:  5'- gCCGCCUGCUgcuggGGCCcgUgGCCGugcCCUGc -3'
miRNA:   3'- -GGUGGAUGG-----CCGGuaGgCGGU---GGACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.