Results 1 - 20 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13970 | 3' | -48.9 | NC_003521.1 | + | 177515 | 0.66 | 0.999944 |
Target: 5'- -aGGCACgagaGGUGGuuGAUGGCGUGGa -3' miRNA: 3'- cgUCGUGaaagCUACC--UUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 100522 | 0.66 | 0.999944 |
Target: 5'- cGguGCACgg-UGgcGGGACAGCuGgGGa -3' miRNA: 3'- -CguCGUGaaaGCuaCCUUGUUG-CgCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 123689 | 0.66 | 0.999944 |
Target: 5'- uGCGGCGUgg-CGGUGGAagAgGAgGCGGc -3' miRNA: 3'- -CGUCGUGaaaGCUACCU--UgUUgCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 104222 | 0.66 | 0.999944 |
Target: 5'- uGCAGCcCag-CGAggacgUGGAGCuGCGCGa -3' miRNA: 3'- -CGUCGuGaaaGCU-----ACCUUGuUGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 163217 | 0.66 | 0.999944 |
Target: 5'- nGCAGUAgCUccggCGGccUGGGACu-CGCGGa -3' miRNA: 3'- -CGUCGU-GAaa--GCU--ACCUUGuuGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 156585 | 0.66 | 0.999944 |
Target: 5'- cGCAucCACcccgaGGUGGuGCAGCGCGGc -3' miRNA: 3'- -CGUc-GUGaaag-CUACCuUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 131261 | 0.66 | 0.999944 |
Target: 5'- aGCGGCGCUUUUGAUuucaccggccaGAACcuACGuCGGg -3' miRNA: 3'- -CGUCGUGAAAGCUAc----------CUUGu-UGC-GCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 101481 | 0.66 | 0.999944 |
Target: 5'- aGUGGCGCgugaGGUGcucGAGCAGCgGCGGc -3' miRNA: 3'- -CGUCGUGaaagCUAC---CUUGUUG-CGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 21285 | 0.66 | 0.999944 |
Target: 5'- -gAGCGCUUcgCGGucUGGcugcGCGugGCGGu -3' miRNA: 3'- cgUCGUGAAa-GCU--ACCu---UGUugCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 142984 | 0.66 | 0.999944 |
Target: 5'- uUAGCACUUUuaaacuuagCGAUGGccCAAagGCGGa -3' miRNA: 3'- cGUCGUGAAA---------GCUACCuuGUUg-CGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 127146 | 0.66 | 0.999944 |
Target: 5'- gGCGGCGCagaUCGccguacugcuUGGAGCucuGCGCGa -3' miRNA: 3'- -CGUCGUGaa-AGCu---------ACCUUGu--UGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 207329 | 0.66 | 0.999939 |
Target: 5'- aGCAGguC-UUCGG-GGGGCGcgucccucgggucgGCGCGGc -3' miRNA: 3'- -CGUCguGaAAGCUaCCUUGU--------------UGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 209591 | 0.66 | 0.999927 |
Target: 5'- cGCGuuCGCUUUaCGGUGGAcgGCuuCGUGGa -3' miRNA: 3'- -CGUc-GUGAAA-GCUACCU--UGuuGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 203356 | 0.66 | 0.999927 |
Target: 5'- uGCGGCACca-CGGUGGcccGCG-CGCGa -3' miRNA: 3'- -CGUCGUGaaaGCUACCu--UGUuGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 95871 | 0.66 | 0.999927 |
Target: 5'- cGCAGCcCUUcgUCGc--GAGcCAGCGCGGc -3' miRNA: 3'- -CGUCGuGAA--AGCuacCUU-GUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 52284 | 0.66 | 0.999927 |
Target: 5'- aGCGGCG--UUC-AUGGugauGGCGACGUGGg -3' miRNA: 3'- -CGUCGUgaAAGcUACC----UUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 28837 | 0.66 | 0.999927 |
Target: 5'- uGCGGCGCcuggaCGAcgagcUGcGGCGGCGCGGc -3' miRNA: 3'- -CGUCGUGaaa--GCU-----ACcUUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 76478 | 0.66 | 0.999927 |
Target: 5'- gGCGGUaggaGCUgUCGccGGGacGCGugGCGGc -3' miRNA: 3'- -CGUCG----UGAaAGCuaCCU--UGUugCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 139693 | 0.66 | 0.999927 |
Target: 5'- uGCAGCACg--CGAUuGGccAGC-ACGgGGa -3' miRNA: 3'- -CGUCGUGaaaGCUA-CC--UUGuUGCgCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 32111 | 0.66 | 0.999927 |
Target: 5'- gGCGGCGCggcugaucUCGGgcaGGuAGCGgGCGCGGu -3' miRNA: 3'- -CGUCGUGaa------AGCUa--CC-UUGU-UGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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