miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 123689 0.66 0.999944
Target:  5'- uGCGGCGUgg-CGGUGGAagAgGAgGCGGc -3'
miRNA:   3'- -CGUCGUGaaaGCUACCU--UgUUgCGCC- -5'
13970 3' -48.9 NC_003521.1 + 127146 0.66 0.999944
Target:  5'- gGCGGCGCagaUCGccguacugcuUGGAGCucuGCGCGa -3'
miRNA:   3'- -CGUCGUGaa-AGCu---------ACCUUGu--UGCGCc -5'
13970 3' -48.9 NC_003521.1 + 142984 0.66 0.999944
Target:  5'- uUAGCACUUUuaaacuuagCGAUGGccCAAagGCGGa -3'
miRNA:   3'- cGUCGUGAAA---------GCUACCuuGUUg-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 100522 0.66 0.999944
Target:  5'- cGguGCACgg-UGgcGGGACAGCuGgGGa -3'
miRNA:   3'- -CguCGUGaaaGCuaCCUUGUUG-CgCC- -5'
13970 3' -48.9 NC_003521.1 + 21285 0.66 0.999944
Target:  5'- -gAGCGCUUcgCGGucUGGcugcGCGugGCGGu -3'
miRNA:   3'- cgUCGUGAAa-GCU--ACCu---UGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 104222 0.66 0.999944
Target:  5'- uGCAGCcCag-CGAggacgUGGAGCuGCGCGa -3'
miRNA:   3'- -CGUCGuGaaaGCU-----ACCUUGuUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 177515 0.66 0.999944
Target:  5'- -aGGCACgagaGGUGGuuGAUGGCGUGGa -3'
miRNA:   3'- cgUCGUGaaagCUACC--UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 101481 0.66 0.999944
Target:  5'- aGUGGCGCgugaGGUGcucGAGCAGCgGCGGc -3'
miRNA:   3'- -CGUCGUGaaagCUAC---CUUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 131261 0.66 0.999944
Target:  5'- aGCGGCGCUUUUGAUuucaccggccaGAACcuACGuCGGg -3'
miRNA:   3'- -CGUCGUGAAAGCUAc----------CUUGu-UGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 156585 0.66 0.999944
Target:  5'- cGCAucCACcccgaGGUGGuGCAGCGCGGc -3'
miRNA:   3'- -CGUc-GUGaaag-CUACCuUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 163217 0.66 0.999944
Target:  5'- nGCAGUAgCUccggCGGccUGGGACu-CGCGGa -3'
miRNA:   3'- -CGUCGU-GAaa--GCU--ACCUUGuuGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 207329 0.66 0.999939
Target:  5'- aGCAGguC-UUCGG-GGGGCGcgucccucgggucgGCGCGGc -3'
miRNA:   3'- -CGUCguGaAAGCUaCCUUGU--------------UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 209591 0.66 0.999927
Target:  5'- cGCGuuCGCUUUaCGGUGGAcgGCuuCGUGGa -3'
miRNA:   3'- -CGUc-GUGAAA-GCUACCU--UGuuGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 203356 0.66 0.999927
Target:  5'- uGCGGCACca-CGGUGGcccGCG-CGCGa -3'
miRNA:   3'- -CGUCGUGaaaGCUACCu--UGUuGCGCc -5'
13970 3' -48.9 NC_003521.1 + 76478 0.66 0.999927
Target:  5'- gGCGGUaggaGCUgUCGccGGGacGCGugGCGGc -3'
miRNA:   3'- -CGUCG----UGAaAGCuaCCU--UGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 28837 0.66 0.999927
Target:  5'- uGCGGCGCcuggaCGAcgagcUGcGGCGGCGCGGc -3'
miRNA:   3'- -CGUCGUGaaa--GCU-----ACcUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 32111 0.66 0.999927
Target:  5'- gGCGGCGCggcugaucUCGGgcaGGuAGCGgGCGCGGu -3'
miRNA:   3'- -CGUCGUGaa------AGCUa--CC-UUGU-UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 139693 0.66 0.999927
Target:  5'- uGCAGCACg--CGAUuGGccAGC-ACGgGGa -3'
miRNA:   3'- -CGUCGUGaaaGCUA-CC--UUGuUGCgCC- -5'
13970 3' -48.9 NC_003521.1 + 95871 0.66 0.999927
Target:  5'- cGCAGCcCUUcgUCGc--GAGcCAGCGCGGc -3'
miRNA:   3'- -CGUCGuGAA--AGCuacCUU-GUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 52284 0.66 0.999927
Target:  5'- aGCGGCG--UUC-AUGGugauGGCGACGUGGg -3'
miRNA:   3'- -CGUCGUgaAAGcUACC----UUGUUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.