miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 224528 0.66 0.720575
Target:  5'- aGCCGCcgGGccgguagGCACCccgGCGCCCaGCa- -3'
miRNA:   3'- gCGGCGaaCCa------CGUGG---CGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 162882 0.66 0.720575
Target:  5'- gGCgCGCgcaGGUGgGCCGCuacuGCCUGCa- -3'
miRNA:   3'- gCG-GCGaa-CCACgUGGCG----CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 125429 0.66 0.720575
Target:  5'- gGCCGUggcGGccGC-CCGCGCCCuGCa- -3'
miRNA:   3'- gCGGCGaa-CCa-CGuGGCGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 142562 0.66 0.720575
Target:  5'- uCGcCCGCcaGGcuCGCCGUGCCCGCc- -3'
miRNA:   3'- -GC-GGCGaaCCacGUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 135019 0.66 0.720575
Target:  5'- gGCUGCc-GG-GCACCGUGgCCUGCg- -3'
miRNA:   3'- gCGGCGaaCCaCGUGGCGC-GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 128039 0.66 0.719645
Target:  5'- gCGCCGCacgcGGUagaaguggccgacGCGCCGCGCgaugCCGCc- -3'
miRNA:   3'- -GCGGCGaa--CCA-------------CGUGGCGCG----GGCGau -5'
13970 5' -62.8 NC_003521.1 + 173007 0.66 0.717782
Target:  5'- uGCCGCUgcacgcggaugcuuUGGaGCA-CGCGCUCGCc- -3'
miRNA:   3'- gCGGCGA--------------ACCaCGUgGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 197343 0.66 0.711244
Target:  5'- cCGCCGCggccagcacGGc-CGCCGCgcugGCCCGCUGu -3'
miRNA:   3'- -GCGGCGaa-------CCacGUGGCG----CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 43561 0.66 0.711244
Target:  5'- cCGCCGCcg---GCGCCGCGUcaagcaCCGCUc -3'
miRNA:   3'- -GCGGCGaaccaCGUGGCGCG------GGCGAu -5'
13970 5' -62.8 NC_003521.1 + 113695 0.66 0.711244
Target:  5'- gCGCCGCcuggaGGUGCACgaCGCG-CUGCUc -3'
miRNA:   3'- -GCGGCGaa---CCACGUG--GCGCgGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 206298 0.66 0.711244
Target:  5'- uCGCCGCUcGcGcgucucgGC-CCGCGgCCGCUAc -3'
miRNA:   3'- -GCGGCGAaC-Ca------CGuGGCGCgGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 170804 0.66 0.711244
Target:  5'- uGuCCGCguuaccUGGUacCGCUGCGCUCGCUGg -3'
miRNA:   3'- gC-GGCGa-----ACCAc-GUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 98039 0.66 0.711244
Target:  5'- cCGCCGU-UGGUgGCACCGaCGaCgCCGCc- -3'
miRNA:   3'- -GCGGCGaACCA-CGUGGC-GC-G-GGCGau -5'
13970 5' -62.8 NC_003521.1 + 200309 0.66 0.711244
Target:  5'- uCGCCGCUgcUGGaggaguucgagaUGCGCUGCGgCgCCGUg- -3'
miRNA:   3'- -GCGGCGA--ACC------------ACGUGGCGC-G-GGCGau -5'
13970 5' -62.8 NC_003521.1 + 90830 0.66 0.711244
Target:  5'- uCGUCGUgcggcgGGUGCGCgC-CGCCCGUg- -3'
miRNA:   3'- -GCGGCGaa----CCACGUG-GcGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 72985 0.66 0.711244
Target:  5'- gGCCGCggGGgGCcugGCCGCuCCUGCUc -3'
miRNA:   3'- gCGGCGaaCCaCG---UGGCGcGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 87260 0.66 0.711244
Target:  5'- aGCgGCU--GUGCGCCGUGCgCGUg- -3'
miRNA:   3'- gCGgCGAacCACGUGGCGCGgGCGau -5'
13970 5' -62.8 NC_003521.1 + 104968 0.66 0.701853
Target:  5'- uGCCGCggGG-GCGCCGCGagaCGUc- -3'
miRNA:   3'- gCGGCGaaCCaCGUGGCGCgg-GCGau -5'
13970 5' -62.8 NC_003521.1 + 185094 0.66 0.701853
Target:  5'- cCGCgCGC-UGGgagGCGCUGCGCgCCGaCa- -3'
miRNA:   3'- -GCG-GCGaACCa--CGUGGCGCG-GGC-Gau -5'
13970 5' -62.8 NC_003521.1 + 119208 0.66 0.701853
Target:  5'- gCGCUGCgccaggUGGUgaGCGCCagccagcugguGUGCUCGCUGg -3'
miRNA:   3'- -GCGGCGa-----ACCA--CGUGG-----------CGCGGGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.