Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13970 | 5' | -62.8 | NC_003521.1 | + | 224528 | 0.66 | 0.720575 |
Target: 5'- aGCCGCcgGGccgguagGCACCccgGCGCCCaGCa- -3' miRNA: 3'- gCGGCGaaCCa------CGUGG---CGCGGG-CGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 162882 | 0.66 | 0.720575 |
Target: 5'- gGCgCGCgcaGGUGgGCCGCuacuGCCUGCa- -3' miRNA: 3'- gCG-GCGaa-CCACgUGGCG----CGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 125429 | 0.66 | 0.720575 |
Target: 5'- gGCCGUggcGGccGC-CCGCGCCCuGCa- -3' miRNA: 3'- gCGGCGaa-CCa-CGuGGCGCGGG-CGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 142562 | 0.66 | 0.720575 |
Target: 5'- uCGcCCGCcaGGcuCGCCGUGCCCGCc- -3' miRNA: 3'- -GC-GGCGaaCCacGUGGCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 135019 | 0.66 | 0.720575 |
Target: 5'- gGCUGCc-GG-GCACCGUGgCCUGCg- -3' miRNA: 3'- gCGGCGaaCCaCGUGGCGC-GGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 128039 | 0.66 | 0.719645 |
Target: 5'- gCGCCGCacgcGGUagaaguggccgacGCGCCGCGCgaugCCGCc- -3' miRNA: 3'- -GCGGCGaa--CCA-------------CGUGGCGCG----GGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 173007 | 0.66 | 0.717782 |
Target: 5'- uGCCGCUgcacgcggaugcuuUGGaGCA-CGCGCUCGCc- -3' miRNA: 3'- gCGGCGA--------------ACCaCGUgGCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 197343 | 0.66 | 0.711244 |
Target: 5'- cCGCCGCggccagcacGGc-CGCCGCgcugGCCCGCUGu -3' miRNA: 3'- -GCGGCGaa-------CCacGUGGCG----CGGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 43561 | 0.66 | 0.711244 |
Target: 5'- cCGCCGCcg---GCGCCGCGUcaagcaCCGCUc -3' miRNA: 3'- -GCGGCGaaccaCGUGGCGCG------GGCGAu -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 113695 | 0.66 | 0.711244 |
Target: 5'- gCGCCGCcuggaGGUGCACgaCGCG-CUGCUc -3' miRNA: 3'- -GCGGCGaa---CCACGUG--GCGCgGGCGAu -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 206298 | 0.66 | 0.711244 |
Target: 5'- uCGCCGCUcGcGcgucucgGC-CCGCGgCCGCUAc -3' miRNA: 3'- -GCGGCGAaC-Ca------CGuGGCGCgGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 170804 | 0.66 | 0.711244 |
Target: 5'- uGuCCGCguuaccUGGUacCGCUGCGCUCGCUGg -3' miRNA: 3'- gC-GGCGa-----ACCAc-GUGGCGCGGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 98039 | 0.66 | 0.711244 |
Target: 5'- cCGCCGU-UGGUgGCACCGaCGaCgCCGCc- -3' miRNA: 3'- -GCGGCGaACCA-CGUGGC-GC-G-GGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 200309 | 0.66 | 0.711244 |
Target: 5'- uCGCCGCUgcUGGaggaguucgagaUGCGCUGCGgCgCCGUg- -3' miRNA: 3'- -GCGGCGA--ACC------------ACGUGGCGC-G-GGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 90830 | 0.66 | 0.711244 |
Target: 5'- uCGUCGUgcggcgGGUGCGCgC-CGCCCGUg- -3' miRNA: 3'- -GCGGCGaa----CCACGUG-GcGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 72985 | 0.66 | 0.711244 |
Target: 5'- gGCCGCggGGgGCcugGCCGCuCCUGCUc -3' miRNA: 3'- gCGGCGaaCCaCG---UGGCGcGGGCGAu -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 87260 | 0.66 | 0.711244 |
Target: 5'- aGCgGCU--GUGCGCCGUGCgCGUg- -3' miRNA: 3'- gCGgCGAacCACGUGGCGCGgGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 104968 | 0.66 | 0.701853 |
Target: 5'- uGCCGCggGG-GCGCCGCGagaCGUc- -3' miRNA: 3'- gCGGCGaaCCaCGUGGCGCgg-GCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 185094 | 0.66 | 0.701853 |
Target: 5'- cCGCgCGC-UGGgagGCGCUGCGCgCCGaCa- -3' miRNA: 3'- -GCG-GCGaACCa--CGUGGCGCG-GGC-Gau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 119208 | 0.66 | 0.701853 |
Target: 5'- gCGCUGCgccaggUGGUgaGCGCCagccagcugguGUGCUCGCUGg -3' miRNA: 3'- -GCGGCGa-----ACCA--CGUGG-----------CGCGGGCGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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