miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 59564 0.66 0.998125
Target:  5'- cCGGCGccGCGgggguuucgUCCGagaAGCGCGCCAa-- -3'
miRNA:   3'- -GCCGUu-UGCa--------AGGU---UCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 235135 0.66 0.998125
Target:  5'- aCGGCGccCGUUCCccgcggacGGGCGC-CCGUGu -3'
miRNA:   3'- -GCCGUuuGCAAGG--------UUCGUGcGGUACc -5'
13971 3' -51.8 NC_003521.1 + 240137 0.66 0.998125
Target:  5'- cCGGCGGGCGcggaAAGCGCugGCuCAUGGc -3'
miRNA:   3'- -GCCGUUUGCaaggUUCGUG--CG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 179453 0.66 0.998125
Target:  5'- aGGUccuuGAGCuGUUgCAggaAGCGgGCCGUGGg -3'
miRNA:   3'- gCCG----UUUG-CAAgGU---UCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 97637 0.66 0.998125
Target:  5'- aGGCucGACGUUCgcGGCGgCGCCG-GGu -3'
miRNA:   3'- gCCGu-UUGCAAGguUCGU-GCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 175447 0.66 0.998125
Target:  5'- uCGGCGuACGaUCgGcGGCGCGCCGUc- -3'
miRNA:   3'- -GCCGUuUGCaAGgU-UCGUGCGGUAcc -5'
13971 3' -51.8 NC_003521.1 + 110660 0.66 0.998125
Target:  5'- gCGGCAGGCaggCCAGGgcguaGCGCUcgGUGGc -3'
miRNA:   3'- -GCCGUUUGcaaGGUUCg----UGCGG--UACC- -5'
13971 3' -51.8 NC_003521.1 + 209565 0.66 0.998125
Target:  5'- gCGGCGAcggugGCGggggUCCGGGgGCGCaCGUagcGGa -3'
miRNA:   3'- -GCCGUU-----UGCa---AGGUUCgUGCG-GUA---CC- -5'
13971 3' -51.8 NC_003521.1 + 205139 0.66 0.998125
Target:  5'- uGGUGAACcaGggCCGGGUG-GCCGUGGa -3'
miRNA:   3'- gCCGUUUG--CaaGGUUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 190695 0.66 0.998125
Target:  5'- aGGCAcacGACGgguagCCA--CACGCuCGUGGg -3'
miRNA:   3'- gCCGU---UUGCaa---GGUucGUGCG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 27013 0.66 0.998125
Target:  5'- aCGGCAucgaaaccGAgGcUCCAGGCGCGgCGcagGGg -3'
miRNA:   3'- -GCCGU--------UUgCaAGGUUCGUGCgGUa--CC- -5'
13971 3' -51.8 NC_003521.1 + 76371 0.66 0.998125
Target:  5'- gCGGCGAcCGUgacggCCGcGGC-CGCgGUGGc -3'
miRNA:   3'- -GCCGUUuGCAa----GGU-UCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 163063 0.66 0.998125
Target:  5'- gCGGCAcuACGUgaaGAGcCACGCCGaGGc -3'
miRNA:   3'- -GCCGUu-UGCAaggUUC-GUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 113810 0.66 0.998125
Target:  5'- gCGGC-GGCGUcgUCGGGCAcCGCCAcgucGGg -3'
miRNA:   3'- -GCCGuUUGCAa-GGUUCGU-GCGGUa---CC- -5'
13971 3' -51.8 NC_003521.1 + 23276 0.66 0.998093
Target:  5'- aCGGCGAGCGacgugcaccgcUUCCuggucuGCACGCgggucuacagcacCGUGGc -3'
miRNA:   3'- -GCCGUUUGC-----------AAGGuu----CGUGCG-------------GUACC- -5'
13971 3' -51.8 NC_003521.1 + 140050 0.66 0.998093
Target:  5'- gCGGCAGGaaggccuCGUUgcaCGAGUGCGCCA-GGc -3'
miRNA:   3'- -GCCGUUU-------GCAAg--GUUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 217347 0.66 0.997921
Target:  5'- aCGGCGGccgguccucguacuuGCuGUguaacacggCCAGGCACaCCGUGGg -3'
miRNA:   3'- -GCCGUU---------------UG-CAa--------GGUUCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 21933 0.66 0.997775
Target:  5'- uGGCGGGCGgccUCGGGCugGagcaGUGGg -3'
miRNA:   3'- gCCGUUUGCaa-GGUUCGugCgg--UACC- -5'
13971 3' -51.8 NC_003521.1 + 115225 0.66 0.997775
Target:  5'- uCGGCcGAgaGUUCCuccguguuguGCGcCGCCGUGGu -3'
miRNA:   3'- -GCCGuUUg-CAAGGuu--------CGU-GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 234189 0.66 0.997775
Target:  5'- -cGCAAGCGggCCAAGCGuuCGCgCGcGGc -3'
miRNA:   3'- gcCGUUUGCaaGGUUCGU--GCG-GUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.