Results 1 - 20 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 59564 | 0.66 | 0.998125 |
Target: 5'- cCGGCGccGCGgggguuucgUCCGagaAGCGCGCCAa-- -3' miRNA: 3'- -GCCGUu-UGCa--------AGGU---UCGUGCGGUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 235135 | 0.66 | 0.998125 |
Target: 5'- aCGGCGccCGUUCCccgcggacGGGCGC-CCGUGu -3' miRNA: 3'- -GCCGUuuGCAAGG--------UUCGUGcGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 240137 | 0.66 | 0.998125 |
Target: 5'- cCGGCGGGCGcggaAAGCGCugGCuCAUGGc -3' miRNA: 3'- -GCCGUUUGCaaggUUCGUG--CG-GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 179453 | 0.66 | 0.998125 |
Target: 5'- aGGUccuuGAGCuGUUgCAggaAGCGgGCCGUGGg -3' miRNA: 3'- gCCG----UUUG-CAAgGU---UCGUgCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 97637 | 0.66 | 0.998125 |
Target: 5'- aGGCucGACGUUCgcGGCGgCGCCG-GGu -3' miRNA: 3'- gCCGu-UUGCAAGguUCGU-GCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 175447 | 0.66 | 0.998125 |
Target: 5'- uCGGCGuACGaUCgGcGGCGCGCCGUc- -3' miRNA: 3'- -GCCGUuUGCaAGgU-UCGUGCGGUAcc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 110660 | 0.66 | 0.998125 |
Target: 5'- gCGGCAGGCaggCCAGGgcguaGCGCUcgGUGGc -3' miRNA: 3'- -GCCGUUUGcaaGGUUCg----UGCGG--UACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 209565 | 0.66 | 0.998125 |
Target: 5'- gCGGCGAcggugGCGggggUCCGGGgGCGCaCGUagcGGa -3' miRNA: 3'- -GCCGUU-----UGCa---AGGUUCgUGCG-GUA---CC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 205139 | 0.66 | 0.998125 |
Target: 5'- uGGUGAACcaGggCCGGGUG-GCCGUGGa -3' miRNA: 3'- gCCGUUUG--CaaGGUUCGUgCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 190695 | 0.66 | 0.998125 |
Target: 5'- aGGCAcacGACGgguagCCA--CACGCuCGUGGg -3' miRNA: 3'- gCCGU---UUGCaa---GGUucGUGCG-GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 27013 | 0.66 | 0.998125 |
Target: 5'- aCGGCAucgaaaccGAgGcUCCAGGCGCGgCGcagGGg -3' miRNA: 3'- -GCCGU--------UUgCaAGGUUCGUGCgGUa--CC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 76371 | 0.66 | 0.998125 |
Target: 5'- gCGGCGAcCGUgacggCCGcGGC-CGCgGUGGc -3' miRNA: 3'- -GCCGUUuGCAa----GGU-UCGuGCGgUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 163063 | 0.66 | 0.998125 |
Target: 5'- gCGGCAcuACGUgaaGAGcCACGCCGaGGc -3' miRNA: 3'- -GCCGUu-UGCAaggUUC-GUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 113810 | 0.66 | 0.998125 |
Target: 5'- gCGGC-GGCGUcgUCGGGCAcCGCCAcgucGGg -3' miRNA: 3'- -GCCGuUUGCAa-GGUUCGU-GCGGUa---CC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 23276 | 0.66 | 0.998093 |
Target: 5'- aCGGCGAGCGacgugcaccgcUUCCuggucuGCACGCgggucuacagcacCGUGGc -3' miRNA: 3'- -GCCGUUUGC-----------AAGGuu----CGUGCG-------------GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 140050 | 0.66 | 0.998093 |
Target: 5'- gCGGCAGGaaggccuCGUUgcaCGAGUGCGCCA-GGc -3' miRNA: 3'- -GCCGUUU-------GCAAg--GUUCGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 217347 | 0.66 | 0.997921 |
Target: 5'- aCGGCGGccgguccucguacuuGCuGUguaacacggCCAGGCACaCCGUGGg -3' miRNA: 3'- -GCCGUU---------------UG-CAa--------GGUUCGUGcGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 21933 | 0.66 | 0.997775 |
Target: 5'- uGGCGGGCGgccUCGGGCugGagcaGUGGg -3' miRNA: 3'- gCCGUUUGCaa-GGUUCGugCgg--UACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 115225 | 0.66 | 0.997775 |
Target: 5'- uCGGCcGAgaGUUCCuccguguuguGCGcCGCCGUGGu -3' miRNA: 3'- -GCCGuUUg-CAAGGuu--------CGU-GCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 234189 | 0.66 | 0.997775 |
Target: 5'- -cGCAAGCGggCCAAGCGuuCGCgCGcGGc -3' miRNA: 3'- gcCGUUUGCaaGGUUCGU--GCG-GUaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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