Results 1 - 20 of 173 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 153009 | 0.65 | 0.889354 |
Target: 5'- aCGUCGCGGaUGUCgcgcuccUGGCCCA---GGCc -3' miRNA: 3'- -GCGGCGUCgACAG-------ACCGGGUaagCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 125616 | 0.66 | 0.883458 |
Target: 5'- uCGCCGCGGaugcaGUCcuUGGCCCGcagcaGGUa -3' miRNA: 3'- -GCGGCGUCga---CAG--ACCGGGUaag--CCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 131081 | 0.66 | 0.883458 |
Target: 5'- gCGaCCGCGGCUcgcgCgGGCuCCGgaCGGCg -3' miRNA: 3'- -GC-GGCGUCGAca--GaCCG-GGUaaGCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 43389 | 0.66 | 0.883458 |
Target: 5'- gCGCCGCcuGGCca--UGGCCUcuucgcuUUCGGCg -3' miRNA: 3'- -GCGGCG--UCGacagACCGGGu------AAGCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 189691 | 0.66 | 0.883458 |
Target: 5'- uCGCUGCGcucguGCUGUCUcaaccaGCCCuccCGGCu -3' miRNA: 3'- -GCGGCGU-----CGACAGAc-----CGGGuaaGCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 201427 | 0.66 | 0.876714 |
Target: 5'- uGCCaacaggacCAGCUGUacCUGGCCC--UgGGCg -3' miRNA: 3'- gCGGc-------GUCGACA--GACCGGGuaAgCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 130739 | 0.66 | 0.876714 |
Target: 5'- -aCCGCAGCgcgGUagagCUGGCCU--UCGGg -3' miRNA: 3'- gcGGCGUCGa--CA----GACCGGGuaAGCCg -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 107318 | 0.66 | 0.876714 |
Target: 5'- uCGCCGCGG--GUUgGGCCCcgcagcagCGGCg -3' miRNA: 3'- -GCGGCGUCgaCAGaCCGGGuaa-----GCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 108202 | 0.66 | 0.876714 |
Target: 5'- gCGCCGCcGCcgaGUCUGGaagCCGUUgCGGa -3' miRNA: 3'- -GCGGCGuCGa--CAGACCg--GGUAA-GCCg -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 1199 | 0.66 | 0.876714 |
Target: 5'- uGCCaacaggacCAGCUGUacCUGGCCC--UgGGCg -3' miRNA: 3'- gCGGc-------GUCGACA--GACCGGGuaAgCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 83450 | 0.66 | 0.876714 |
Target: 5'- uCGUCGUAGgUGagacUCUGGCCCAcgUCcaGCa -3' miRNA: 3'- -GCGGCGUCgAC----AGACCGGGUa-AGc-CG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 91010 | 0.66 | 0.876714 |
Target: 5'- aGCUGCAGCagGUC-GGUCaCGgcCGGCc -3' miRNA: 3'- gCGGCGUCGa-CAGaCCGG-GUaaGCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 141292 | 0.66 | 0.872572 |
Target: 5'- cCGCUGCGGCacgGUCUccgaccugauccuggGcGCCCuccagCGGCa -3' miRNA: 3'- -GCGGCGUCGa--CAGA---------------C-CGGGuaa--GCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 75082 | 0.66 | 0.870474 |
Target: 5'- cCGCCGCcGCccucccucaacaacgUGUUccgcgaggUGGCCCGcacgguggacggcuUUCGGCg -3' miRNA: 3'- -GCGGCGuCG---------------ACAG--------ACCGGGU--------------AAGCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 116421 | 0.66 | 0.869771 |
Target: 5'- -cUCGCGGCUGUC-GGCCCuGUUUGuCa -3' miRNA: 3'- gcGGCGUCGACAGaCCGGG-UAAGCcG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 168525 | 0.66 | 0.869771 |
Target: 5'- aCGCCaGCAgGCUGgc-GGCCagcgCGGCg -3' miRNA: 3'- -GCGG-CGU-CGACagaCCGGguaaGCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 55990 | 0.66 | 0.869771 |
Target: 5'- gGCCGCAGCc----GGUCCA--CGGCg -3' miRNA: 3'- gCGGCGUCGacagaCCGGGUaaGCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 74502 | 0.66 | 0.869771 |
Target: 5'- uCG-CGCAGCUG-CUGGagCAgagCGGCa -3' miRNA: 3'- -GCgGCGUCGACaGACCggGUaa-GCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 170088 | 0.66 | 0.869771 |
Target: 5'- gCGCUGCAGCUGgacgaagugCcGGUaCAUcCGGCg -3' miRNA: 3'- -GCGGCGUCGACa--------GaCCGgGUAaGCCG- -5' |
|||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 75894 | 0.66 | 0.869771 |
Target: 5'- cCGCCGgAGgaGg--GGCCCggUUGGUc -3' miRNA: 3'- -GCGGCgUCgaCagaCCGGGuaAGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home