miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 153009 0.65 0.889354
Target:  5'- aCGUCGCGGaUGUCgcgcuccUGGCCCA---GGCc -3'
miRNA:   3'- -GCGGCGUCgACAG-------ACCGGGUaagCCG- -5'
13971 5' -59.1 NC_003521.1 + 125616 0.66 0.883458
Target:  5'- uCGCCGCGGaugcaGUCcuUGGCCCGcagcaGGUa -3'
miRNA:   3'- -GCGGCGUCga---CAG--ACCGGGUaag--CCG- -5'
13971 5' -59.1 NC_003521.1 + 131081 0.66 0.883458
Target:  5'- gCGaCCGCGGCUcgcgCgGGCuCCGgaCGGCg -3'
miRNA:   3'- -GC-GGCGUCGAca--GaCCG-GGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 43389 0.66 0.883458
Target:  5'- gCGCCGCcuGGCca--UGGCCUcuucgcuUUCGGCg -3'
miRNA:   3'- -GCGGCG--UCGacagACCGGGu------AAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 189691 0.66 0.883458
Target:  5'- uCGCUGCGcucguGCUGUCUcaaccaGCCCuccCGGCu -3'
miRNA:   3'- -GCGGCGU-----CGACAGAc-----CGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 201427 0.66 0.876714
Target:  5'- uGCCaacaggacCAGCUGUacCUGGCCC--UgGGCg -3'
miRNA:   3'- gCGGc-------GUCGACA--GACCGGGuaAgCCG- -5'
13971 5' -59.1 NC_003521.1 + 130739 0.66 0.876714
Target:  5'- -aCCGCAGCgcgGUagagCUGGCCU--UCGGg -3'
miRNA:   3'- gcGGCGUCGa--CA----GACCGGGuaAGCCg -5'
13971 5' -59.1 NC_003521.1 + 107318 0.66 0.876714
Target:  5'- uCGCCGCGG--GUUgGGCCCcgcagcagCGGCg -3'
miRNA:   3'- -GCGGCGUCgaCAGaCCGGGuaa-----GCCG- -5'
13971 5' -59.1 NC_003521.1 + 108202 0.66 0.876714
Target:  5'- gCGCCGCcGCcgaGUCUGGaagCCGUUgCGGa -3'
miRNA:   3'- -GCGGCGuCGa--CAGACCg--GGUAA-GCCg -5'
13971 5' -59.1 NC_003521.1 + 1199 0.66 0.876714
Target:  5'- uGCCaacaggacCAGCUGUacCUGGCCC--UgGGCg -3'
miRNA:   3'- gCGGc-------GUCGACA--GACCGGGuaAgCCG- -5'
13971 5' -59.1 NC_003521.1 + 83450 0.66 0.876714
Target:  5'- uCGUCGUAGgUGagacUCUGGCCCAcgUCcaGCa -3'
miRNA:   3'- -GCGGCGUCgAC----AGACCGGGUa-AGc-CG- -5'
13971 5' -59.1 NC_003521.1 + 91010 0.66 0.876714
Target:  5'- aGCUGCAGCagGUC-GGUCaCGgcCGGCc -3'
miRNA:   3'- gCGGCGUCGa-CAGaCCGG-GUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 141292 0.66 0.872572
Target:  5'- cCGCUGCGGCacgGUCUccgaccugauccuggGcGCCCuccagCGGCa -3'
miRNA:   3'- -GCGGCGUCGa--CAGA---------------C-CGGGuaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 75082 0.66 0.870474
Target:  5'- cCGCCGCcGCccucccucaacaacgUGUUccgcgaggUGGCCCGcacgguggacggcuUUCGGCg -3'
miRNA:   3'- -GCGGCGuCG---------------ACAG--------ACCGGGU--------------AAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 116421 0.66 0.869771
Target:  5'- -cUCGCGGCUGUC-GGCCCuGUUUGuCa -3'
miRNA:   3'- gcGGCGUCGACAGaCCGGG-UAAGCcG- -5'
13971 5' -59.1 NC_003521.1 + 168525 0.66 0.869771
Target:  5'- aCGCCaGCAgGCUGgc-GGCCagcgCGGCg -3'
miRNA:   3'- -GCGG-CGU-CGACagaCCGGguaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 55990 0.66 0.869771
Target:  5'- gGCCGCAGCc----GGUCCA--CGGCg -3'
miRNA:   3'- gCGGCGUCGacagaCCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 74502 0.66 0.869771
Target:  5'- uCG-CGCAGCUG-CUGGagCAgagCGGCa -3'
miRNA:   3'- -GCgGCGUCGACaGACCggGUaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 170088 0.66 0.869771
Target:  5'- gCGCUGCAGCUGgacgaagugCcGGUaCAUcCGGCg -3'
miRNA:   3'- -GCGGCGUCGACa--------GaCCGgGUAaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 75894 0.66 0.869771
Target:  5'- cCGCCGgAGgaGg--GGCCCggUUGGUc -3'
miRNA:   3'- -GCGGCgUCgaCagaCCGGGuaAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.