miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 183645 0.66 0.729697
Target:  5'- cUgCGCCGcuUCGUgCUGCgGCaCGCCGaCGAc -3'
miRNA:   3'- aAgGCGGC--AGCA-GACG-CG-GCGGC-GCU- -5'
13973 3' -63.1 NC_003521.1 + 61973 0.66 0.729697
Target:  5'- -cCCGCUGacuuuccCGUCgcccccGCGCCGCCugaGCGAg -3'
miRNA:   3'- aaGGCGGCa------GCAGa-----CGCGGCGG---CGCU- -5'
13973 3' -63.1 NC_003521.1 + 107450 0.66 0.729697
Target:  5'- -aCCGCCG-CG-CUGUGCCGgCG-GAc -3'
miRNA:   3'- aaGGCGGCaGCaGACGCGGCgGCgCU- -5'
13973 3' -63.1 NC_003521.1 + 90049 0.66 0.729697
Target:  5'- -cCCGcCCGUCGUC-GCGCgagCGCacaCGCGGg -3'
miRNA:   3'- aaGGC-GGCAGCAGaCGCG---GCG---GCGCU- -5'
13973 3' -63.1 NC_003521.1 + 142358 0.66 0.729697
Target:  5'- -gCCGCCG-CGgc--CGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCaGCagacGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 233839 0.66 0.729697
Target:  5'- -aCCGCCGUgucgugCGUCUGCGCguccUGUCGUccGAg -3'
miRNA:   3'- aaGGCGGCA------GCAGACGCG----GCGGCG--CU- -5'
13973 3' -63.1 NC_003521.1 + 120604 0.66 0.729697
Target:  5'- cUCCuGCCGguagCGUCUGCGUUuugGCaGCGGg -3'
miRNA:   3'- aAGG-CGGCa---GCAGACGCGG---CGgCGCU- -5'
13973 3' -63.1 NC_003521.1 + 62560 0.66 0.729697
Target:  5'- -aCCGCaCGUCGcaaUGCagcaacGCCGCCGCc- -3'
miRNA:   3'- aaGGCG-GCAGCag-ACG------CGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 148890 0.66 0.721452
Target:  5'- gUCCGCCGcCGgguccaccgcauCGCCGCCGCc- -3'
miRNA:   3'- aAGGCGGCaGCagac--------GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 214815 0.66 0.720532
Target:  5'- uUUCUGCacauggGUCUGCGgCGCUGCGGc -3'
miRNA:   3'- -AAGGCGgcag--CAGACGCgGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 43338 0.66 0.720532
Target:  5'- cUCCG-CGcCGUCcgGC-CCGCCGCGc -3'
miRNA:   3'- aAGGCgGCaGCAGa-CGcGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 122900 0.66 0.720532
Target:  5'- cUCCcCCGUC--CUGCGCacCGCCGUGGu -3'
miRNA:   3'- aAGGcGGCAGcaGACGCG--GCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 228237 0.66 0.711302
Target:  5'- --aCGCUgGUCGUgguggGUGCCGCCGUGGu -3'
miRNA:   3'- aagGCGG-CAGCAga---CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 1442 0.66 0.711302
Target:  5'- ---gGCCG-CGagCUGCGCCGCCgGUGGc -3'
miRNA:   3'- aaggCGGCaGCa-GACGCGGCGG-CGCU- -5'
13973 3' -63.1 NC_003521.1 + 240749 0.66 0.711302
Target:  5'- -aCCgGCCGgccCGcCgcaCGCCGCCGCGGa -3'
miRNA:   3'- aaGG-CGGCa--GCaGac-GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 167575 0.66 0.711302
Target:  5'- --gCGCuCGUCGUCa-CGCCGCUGCu- -3'
miRNA:   3'- aagGCG-GCAGCAGacGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 200 0.66 0.711302
Target:  5'- -aCCgGCCGgccCGcCgcaCGCCGCCGCGGa -3'
miRNA:   3'- aaGG-CGGCa--GCaGac-GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 201669 0.66 0.711302
Target:  5'- ---gGCCG-CGagCUGCGCCGCCgGUGGc -3'
miRNA:   3'- aaggCGGCaGCa-GACGCGGCGG-CGCU- -5'
13973 3' -63.1 NC_003521.1 + 146417 0.66 0.711302
Target:  5'- -gCCGCCG-CGUCaaccUGCGCgGCUaCGAu -3'
miRNA:   3'- aaGGCGGCaGCAG----ACGCGgCGGcGCU- -5'
13973 3' -63.1 NC_003521.1 + 40522 0.66 0.711302
Target:  5'- -aCCgGCCGgccCGcCgcaCGCCGCCGCGGa -3'
miRNA:   3'- aaGG-CGGCa--GCaGac-GCGGCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.