Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13973 | 5' | -55.2 | NC_003521.1 | + | 188229 | 0.66 | 0.967595 |
Target: 5'- cGUcgaAGCGGUCGCAGcaGCGGuugaGCCAg -3' miRNA: 3'- aCG---UCGUCAGCGUCcaUGUCug--UGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 167661 | 0.66 | 0.967595 |
Target: 5'- cGC-GCcaGGUCGCAGGccgagGCGG-CGCCGc -3' miRNA: 3'- aCGuCG--UCAGCGUCCa----UGUCuGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 102527 | 0.66 | 0.967595 |
Target: 5'- uUGCAGCAGauugcccgauacUCGC-GGUGCuucuggcccuuGGAgACCAg -3' miRNA: 3'- -ACGUCGUC------------AGCGuCCAUG-----------UCUgUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 150675 | 0.66 | 0.967595 |
Target: 5'- gGCGGCGG-CGCcgcugcugcuGGGUGCuGcuGCGCCGg -3' miRNA: 3'- aCGUCGUCaGCG----------UCCAUGuC--UGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 137784 | 0.66 | 0.967595 |
Target: 5'- cUGCAGCAccugCGCaugucuGGGUACGGcUACCGu -3' miRNA: 3'- -ACGUCGUca--GCG------UCCAUGUCuGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 128425 | 0.66 | 0.965724 |
Target: 5'- gGCGGcCGGUCGgcgcacugcgccagcCAGGUggACgAGACGCCGc -3' miRNA: 3'- aCGUC-GUCAGC---------------GUCCA--UG-UCUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 111047 | 0.66 | 0.964435 |
Target: 5'- gGCGcGCAcGUgCGCGGG-ACAGGCGCg- -3' miRNA: 3'- aCGU-CGU-CA-GCGUCCaUGUCUGUGgu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 102318 | 0.66 | 0.964435 |
Target: 5'- cGCGGCAucGUCGUcgugcgcguGGGcGCcGACGCCGg -3' miRNA: 3'- aCGUCGU--CAGCG---------UCCaUGuCUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 153458 | 0.66 | 0.964435 |
Target: 5'- gGcCAGCGGcUCGCAGGccacguacacGCGGAUGCCc -3' miRNA: 3'- aC-GUCGUC-AGCGUCCa---------UGUCUGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 168372 | 0.66 | 0.964435 |
Target: 5'- aGCGGCAGUCGgCGGGca-GGAUguagguggcguuGCCGc -3' miRNA: 3'- aCGUCGUCAGC-GUCCaugUCUG------------UGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 109022 | 0.66 | 0.964435 |
Target: 5'- aUGCAGgggaAGUUGguGGUcCAGuACACCc -3' miRNA: 3'- -ACGUCg---UCAGCguCCAuGUC-UGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 5656 | 0.66 | 0.964435 |
Target: 5'- gGCGGCGGagGguGGggggucgagacACGGGCGCCc -3' miRNA: 3'- aCGUCGUCagCguCCa----------UGUCUGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 117391 | 0.66 | 0.964435 |
Target: 5'- gUGCGGCAcgCGCu-GUGCuGGCACCGg -3' miRNA: 3'- -ACGUCGUcaGCGucCAUGuCUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 122848 | 0.66 | 0.964435 |
Target: 5'- cGCAGCucGUCGUAgcgcuGGUGCuGGcCGCCGc -3' miRNA: 3'- aCGUCGu-CAGCGU-----CCAUGuCU-GUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 141964 | 0.66 | 0.961064 |
Target: 5'- aGCGGCGGUaGCA-GUACcaACACCAc -3' miRNA: 3'- aCGUCGUCAgCGUcCAUGucUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 146371 | 0.66 | 0.961064 |
Target: 5'- cGgGGCGGUUcCGGGUACAGGgAUCc -3' miRNA: 3'- aCgUCGUCAGcGUCCAUGUCUgUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 79212 | 0.66 | 0.961064 |
Target: 5'- cGCAGCAcGUUGCccgAGGgcacCAGAUGCCc -3' miRNA: 3'- aCGUCGU-CAGCG---UCCau--GUCUGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 7806 | 0.66 | 0.961064 |
Target: 5'- -aCGGCGuGUCG-GGGUGCAGaACGCCu -3' miRNA: 3'- acGUCGU-CAGCgUCCAUGUC-UGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 174667 | 0.66 | 0.961064 |
Target: 5'- gGCGGCGuucuuagccacGUCauGCAGGUccuuCAGACACUg -3' miRNA: 3'- aCGUCGU-----------CAG--CGUCCAu---GUCUGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 100171 | 0.66 | 0.961064 |
Target: 5'- --aAGCGGUCGUAGGg--AGACACg- -3' miRNA: 3'- acgUCGUCAGCGUCCaugUCUGUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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