miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 188229 0.66 0.967595
Target:  5'- cGUcgaAGCGGUCGCAGcaGCGGuugaGCCAg -3'
miRNA:   3'- aCG---UCGUCAGCGUCcaUGUCug--UGGU- -5'
13973 5' -55.2 NC_003521.1 + 167661 0.66 0.967595
Target:  5'- cGC-GCcaGGUCGCAGGccgagGCGG-CGCCGc -3'
miRNA:   3'- aCGuCG--UCAGCGUCCa----UGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 102527 0.66 0.967595
Target:  5'- uUGCAGCAGauugcccgauacUCGC-GGUGCuucuggcccuuGGAgACCAg -3'
miRNA:   3'- -ACGUCGUC------------AGCGuCCAUG-----------UCUgUGGU- -5'
13973 5' -55.2 NC_003521.1 + 150675 0.66 0.967595
Target:  5'- gGCGGCGG-CGCcgcugcugcuGGGUGCuGcuGCGCCGg -3'
miRNA:   3'- aCGUCGUCaGCG----------UCCAUGuC--UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 137784 0.66 0.967595
Target:  5'- cUGCAGCAccugCGCaugucuGGGUACGGcUACCGu -3'
miRNA:   3'- -ACGUCGUca--GCG------UCCAUGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 128425 0.66 0.965724
Target:  5'- gGCGGcCGGUCGgcgcacugcgccagcCAGGUggACgAGACGCCGc -3'
miRNA:   3'- aCGUC-GUCAGC---------------GUCCA--UG-UCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 111047 0.66 0.964435
Target:  5'- gGCGcGCAcGUgCGCGGG-ACAGGCGCg- -3'
miRNA:   3'- aCGU-CGU-CA-GCGUCCaUGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 102318 0.66 0.964435
Target:  5'- cGCGGCAucGUCGUcgugcgcguGGGcGCcGACGCCGg -3'
miRNA:   3'- aCGUCGU--CAGCG---------UCCaUGuCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 153458 0.66 0.964435
Target:  5'- gGcCAGCGGcUCGCAGGccacguacacGCGGAUGCCc -3'
miRNA:   3'- aC-GUCGUC-AGCGUCCa---------UGUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 168372 0.66 0.964435
Target:  5'- aGCGGCAGUCGgCGGGca-GGAUguagguggcguuGCCGc -3'
miRNA:   3'- aCGUCGUCAGC-GUCCaugUCUG------------UGGU- -5'
13973 5' -55.2 NC_003521.1 + 109022 0.66 0.964435
Target:  5'- aUGCAGgggaAGUUGguGGUcCAGuACACCc -3'
miRNA:   3'- -ACGUCg---UCAGCguCCAuGUC-UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 5656 0.66 0.964435
Target:  5'- gGCGGCGGagGguGGggggucgagacACGGGCGCCc -3'
miRNA:   3'- aCGUCGUCagCguCCa----------UGUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 117391 0.66 0.964435
Target:  5'- gUGCGGCAcgCGCu-GUGCuGGCACCGg -3'
miRNA:   3'- -ACGUCGUcaGCGucCAUGuCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 122848 0.66 0.964435
Target:  5'- cGCAGCucGUCGUAgcgcuGGUGCuGGcCGCCGc -3'
miRNA:   3'- aCGUCGu-CAGCGU-----CCAUGuCU-GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 141964 0.66 0.961064
Target:  5'- aGCGGCGGUaGCA-GUACcaACACCAc -3'
miRNA:   3'- aCGUCGUCAgCGUcCAUGucUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 146371 0.66 0.961064
Target:  5'- cGgGGCGGUUcCGGGUACAGGgAUCc -3'
miRNA:   3'- aCgUCGUCAGcGUCCAUGUCUgUGGu -5'
13973 5' -55.2 NC_003521.1 + 79212 0.66 0.961064
Target:  5'- cGCAGCAcGUUGCccgAGGgcacCAGAUGCCc -3'
miRNA:   3'- aCGUCGU-CAGCG---UCCau--GUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 7806 0.66 0.961064
Target:  5'- -aCGGCGuGUCG-GGGUGCAGaACGCCu -3'
miRNA:   3'- acGUCGU-CAGCgUCCAUGUC-UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 174667 0.66 0.961064
Target:  5'- gGCGGCGuucuuagccacGUCauGCAGGUccuuCAGACACUg -3'
miRNA:   3'- aCGUCGU-----------CAG--CGUCCAu---GUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 100171 0.66 0.961064
Target:  5'- --aAGCGGUCGUAGGg--AGACACg- -3'
miRNA:   3'- acgUCGUCAGCGUCCaugUCUGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.