Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13976 | 3' | -55.9 | NC_003521.1 | + | 173695 | 0.66 | 0.953027 |
Target: 5'- cUGUGCGGcccgcuGCUgUUGCuGCUGCUGgGa -3' miRNA: 3'- -ACAUGCU------CGAgAGCGuCGACGACgUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 225475 | 0.66 | 0.953027 |
Target: 5'- aGUACGucacCagUCGCGaCUGCUGCACc -3' miRNA: 3'- aCAUGCuc--GagAGCGUcGACGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 153639 | 0.66 | 0.953027 |
Target: 5'- --aGCGGGUgcgUCUCGguGgaGCgcUGCACg -3' miRNA: 3'- acaUGCUCG---AGAGCguCgaCG--ACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 54869 | 0.66 | 0.953027 |
Target: 5'- --cACGAGCuguugaaagugaUCUggacaCGCAGUgGCUGCGCa -3' miRNA: 3'- acaUGCUCG------------AGA-----GCGUCGaCGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 96892 | 0.66 | 0.948959 |
Target: 5'- gGUGCGAGCagUUGgGGaUGCgGCGCg -3' miRNA: 3'- aCAUGCUCGagAGCgUCgACGaCGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 15058 | 0.66 | 0.948959 |
Target: 5'- --cGCGAGCgcgaGCGGCgcgUGCUGCAa -3' miRNA: 3'- acaUGCUCGagagCGUCG---ACGACGUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 17585 | 0.66 | 0.948959 |
Target: 5'- --aGCGcacGCUCUCGCuGCUGCagGgGCu -3' miRNA: 3'- acaUGCu--CGAGAGCGuCGACGa-CgUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 89947 | 0.66 | 0.948959 |
Target: 5'- cGUGCGGccgcaccucGUUCUCGCccGGCUGgaaCUGCAa -3' miRNA: 3'- aCAUGCU---------CGAGAGCG--UCGAC---GACGUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 179220 | 0.66 | 0.948959 |
Target: 5'- cGUugGAGCgCUgcgcccccUGCAGCgaguuCUGCACg -3' miRNA: 3'- aCAugCUCGaGA--------GCGUCGac---GACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 73392 | 0.66 | 0.948959 |
Target: 5'- aUGUcCGAGUUCaUC-CAcCUGCUGCGCc -3' miRNA: 3'- -ACAuGCUCGAG-AGcGUcGACGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 150272 | 0.66 | 0.948959 |
Target: 5'- cGgcCGGcCUCUCGUGGgUGCUGuCGCg -3' miRNA: 3'- aCauGCUcGAGAGCGUCgACGAC-GUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 44312 | 0.66 | 0.948959 |
Target: 5'- cGUACGGGgUgCUgaaGCAGgUGCUGgGCa -3' miRNA: 3'- aCAUGCUCgA-GAg--CGUCgACGACgUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 116410 | 0.66 | 0.948959 |
Target: 5'- --gACGAGgagaUCUCGCGGCUGUcgGCc- -3' miRNA: 3'- acaUGCUCg---AGAGCGUCGACGa-CGug -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 162573 | 0.66 | 0.944663 |
Target: 5'- --gACGGGCUUcagCGCucugccGGCUGCggugGCACu -3' miRNA: 3'- acaUGCUCGAGa--GCG------UCGACGa---CGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 394 | 0.66 | 0.944663 |
Target: 5'- gUGUGCuGGCg--CGCGGCUGUgacUGCAg -3' miRNA: 3'- -ACAUGcUCGagaGCGUCGACG---ACGUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 83641 | 0.66 | 0.944663 |
Target: 5'- ---cCGGGCuucucUCUUGCAGgUGCgGCACg -3' miRNA: 3'- acauGCUCG-----AGAGCGUCgACGaCGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 40716 | 0.66 | 0.944663 |
Target: 5'- gUGUGCuGGCg--CGCGGCUGUgacUGCAg -3' miRNA: 3'- -ACAUGcUCGagaGCGUCGACG---ACGUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 179447 | 0.66 | 0.940138 |
Target: 5'- cGUAUGAGgUcCUUG-AGCUGUUGCAg -3' miRNA: 3'- aCAUGCUCgA-GAGCgUCGACGACGUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 156144 | 0.66 | 0.940138 |
Target: 5'- gUGUgcACGcAGCUgCUgGC-GCUGCUGCGa -3' miRNA: 3'- -ACA--UGC-UCGA-GAgCGuCGACGACGUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 84981 | 0.66 | 0.940138 |
Target: 5'- --aGCGAGCUCUgCGUacGGUU-CUGCGCc -3' miRNA: 3'- acaUGCUCGAGA-GCG--UCGAcGACGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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