miRNA display CGI


Results 1 - 20 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 5' -60.5 NC_003521.1 + 178637 0.65 0.873817
Target:  5'- gGGCGAUAgGGGgGaggagggugacaGUCccagcaggUGCGCCGCg -3'
miRNA:   3'- -CCGCUGUgCCCgCgg----------CAG--------AUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 95896 0.66 0.872466
Target:  5'- cGGCGACGCGcgacaugaacuccucGGCcaccggcauGCCGUggGC-CCGCa -3'
miRNA:   3'- -CCGCUGUGC---------------CCG---------CGGCAgaUGcGGCG- -5'
13977 5' -60.5 NC_003521.1 + 91423 0.66 0.872466
Target:  5'- gGGCGACcgugcgcaugcgccUGGGgGCUuUCUAUGCgCGCa -3'
miRNA:   3'- -CCGCUGu-------------GCCCgCGGcAGAUGCG-GCG- -5'
13977 5' -60.5 NC_003521.1 + 77724 0.66 0.869741
Target:  5'- uGGCGACGgcggccucggUGGGCGgCGUCUGguaGUgGUu -3'
miRNA:   3'- -CCGCUGU----------GCCCGCgGCAGAUg--CGgCG- -5'
13977 5' -60.5 NC_003521.1 + 19456 0.66 0.869741
Target:  5'- aGGCGcgGCGGGaccauGUCG-CUGCGCgGCc -3'
miRNA:   3'- -CCGCugUGCCCg----CGGCaGAUGCGgCG- -5'
13977 5' -60.5 NC_003521.1 + 170949 0.66 0.869741
Target:  5'- -aUGGCcUGGGCGUgGcgCUGCGCgGCg -3'
miRNA:   3'- ccGCUGuGCCCGCGgCa-GAUGCGgCG- -5'
13977 5' -60.5 NC_003521.1 + 175108 0.66 0.869741
Target:  5'- -cCGGC-CaGGGcCGCCG-CgGCGCCGCu -3'
miRNA:   3'- ccGCUGuG-CCC-GCGGCaGaUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 185737 0.66 0.869741
Target:  5'- aGGUGAUcgccgaGCGGGUgcGCCGgagCgccuagGgGCCGCg -3'
miRNA:   3'- -CCGCUG------UGCCCG--CGGCa--Ga-----UgCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 166127 0.66 0.869741
Target:  5'- cGCuGcCGCGGcGcCGCCGUCgcUGCUGCu -3'
miRNA:   3'- cCG-CuGUGCC-C-GCGGCAGauGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 73129 0.66 0.869741
Target:  5'- aGGUGcuGCACGGcgggggcaGCGgCGgcgGCGCCGCc -3'
miRNA:   3'- -CCGC--UGUGCC--------CGCgGCagaUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 23644 0.66 0.869741
Target:  5'- gGGCGGCAUGGacCGUCGUCgUugGCaggucaucguauCGCu -3'
miRNA:   3'- -CCGCUGUGCCc-GCGGCAG-AugCG------------GCG- -5'
13977 5' -60.5 NC_003521.1 + 70324 0.66 0.869741
Target:  5'- aGCGAgGCGGuGaCGCCGUCcagcaggGCGuuGa -3'
miRNA:   3'- cCGCUgUGCC-C-GCGGCAGa------UGCggCg -5'
13977 5' -60.5 NC_003521.1 + 162881 0.66 0.869741
Target:  5'- gGGCGcGCGCaGGuGgGCCG-CUACuGCCuGCa -3'
miRNA:   3'- -CCGC-UGUG-CC-CgCGGCaGAUG-CGG-CG- -5'
13977 5' -60.5 NC_003521.1 + 124226 0.66 0.869741
Target:  5'- cGCGAC-CGGGC-CCGauuccgaagggUUggguCGCCGCg -3'
miRNA:   3'- cCGCUGuGCCCGcGGC-----------AGau--GCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 164665 0.66 0.869741
Target:  5'- cGCGACACcuguaccuGCGCCGUgUGCGCg-- -3'
miRNA:   3'- cCGCUGUGcc------CGCGGCAgAUGCGgcg -5'
13977 5' -60.5 NC_003521.1 + 105450 0.66 0.869055
Target:  5'- uGGCGccCGCGGGCgauaaccGCCG-CggagacgGCGCgCGCg -3'
miRNA:   3'- -CCGCu-GUGCCCG-------CGGCaGa------UGCG-GCG- -5'
13977 5' -60.5 NC_003521.1 + 155618 0.66 0.867678
Target:  5'- uGGCGACcgcuguucucgGCGGcggugguagcagaaGCGCCGUgCUGgGUgGCg -3'
miRNA:   3'- -CCGCUG-----------UGCC--------------CGCGGCA-GAUgCGgCG- -5'
13977 5' -60.5 NC_003521.1 + 236460 0.66 0.865598
Target:  5'- cGgGACGCGGGCcgcgaugagcgaaccGCCGgcggCggugGCGCCagGCa -3'
miRNA:   3'- cCgCUGUGCCCG---------------CGGCa---Ga---UGCGG--CG- -5'
13977 5' -60.5 NC_003521.1 + 131047 0.66 0.8628
Target:  5'- gGGCGGCgGCGGcGgGCC-UCUggACGCgGUg -3'
miRNA:   3'- -CCGCUG-UGCC-CgCGGcAGA--UGCGgCG- -5'
13977 5' -60.5 NC_003521.1 + 64534 0.66 0.8628
Target:  5'- cGCGACgACGccgacGC-CCGUCUGCuGCUGCu -3'
miRNA:   3'- cCGCUG-UGCc----CGcGGCAGAUG-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.