Results 1 - 20 of 561 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 117219 | 0.66 | 0.800568 |
Target: 5'- aCGGCGGCuGCcccUGCGaCGcaaggGCACGcAUCa -3' miRNA: 3'- -GCCGCCGuCG---ACGCgGCa----CGUGC-UGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 60747 | 0.66 | 0.800568 |
Target: 5'- aCGGCGGCGGCaGuCGCCGcGggagaaucccCGCcGCCu -3' miRNA: 3'- -GCCGCCGUCGaC-GCGGCaC----------GUGcUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 196692 | 0.66 | 0.800568 |
Target: 5'- -cGCGGCuGUUGCGguaGUGguUGGCCa -3' miRNA: 3'- gcCGCCGuCGACGCgg-CACguGCUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 74378 | 0.66 | 0.800568 |
Target: 5'- gCGGCGaCGGCU-CGCCcucgaucuacacGUGCguggACGACCu -3' miRNA: 3'- -GCCGCcGUCGAcGCGG------------CACG----UGCUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 137304 | 0.66 | 0.800568 |
Target: 5'- gGGUGGC-GCgGCuGCUGcGCGgCGACCc -3' miRNA: 3'- gCCGCCGuCGaCG-CGGCaCGU-GCUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 100423 | 0.66 | 0.800568 |
Target: 5'- uGGUGGUgagaagaagcGGCgGCGCuCGggaGCAgGGCCg -3' miRNA: 3'- gCCGCCG----------UCGaCGCG-GCa--CGUgCUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 154668 | 0.66 | 0.800568 |
Target: 5'- aGGcCGGCAGCgagaCGCuggaggcuaccgCGUGUGCGACg -3' miRNA: 3'- gCC-GCCGUCGac--GCG------------GCACGUGCUGg -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 100500 | 0.66 | 0.800568 |
Target: 5'- aGGUGGCAccGCggGCGUCGgacggUGCACGGu- -3' miRNA: 3'- gCCGCCGU--CGa-CGCGGC-----ACGUGCUgg -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 46190 | 0.66 | 0.800568 |
Target: 5'- gGGCuGCAcgguGCUgGUGUCGUGCGCG-CUg -3' miRNA: 3'- gCCGcCGU----CGA-CGCGGCACGUGCuGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 95440 | 0.66 | 0.800568 |
Target: 5'- aGGCccaGGCcgucgcgcaccGGCUcGCGcCCGUGCAucacguggcacuCGACCa -3' miRNA: 3'- gCCG---CCG-----------UCGA-CGC-GGCACGU------------GCUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 89148 | 0.66 | 0.800568 |
Target: 5'- aCGGaccgcaagacccUGGaCGGCUGgGCCGUGgGCcuGGCCc -3' miRNA: 3'- -GCC------------GCC-GUCGACgCGGCACgUG--CUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 87402 | 0.66 | 0.800568 |
Target: 5'- cCGGCuGCuGCUGaccaCGCCGgugGCGC-ACCu -3' miRNA: 3'- -GCCGcCGuCGAC----GCGGCa--CGUGcUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 1565 | 0.66 | 0.798063 |
Target: 5'- uCGGCGccacacccgccgucGCuGCUGacgGCCGUGCAgcGCCa -3' miRNA: 3'- -GCCGC--------------CGuCGACg--CGGCACGUgcUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 201792 | 0.66 | 0.798063 |
Target: 5'- uCGGCGccacacccgccgucGCuGCUGacgGCCGUGCAgcGCCa -3' miRNA: 3'- -GCCGC--------------CGuCGACg--CGGCACGUgcUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 111595 | 0.66 | 0.797226 |
Target: 5'- gCGcGUGGcCAGCgGCGCCGgacugcccaccacGCGCcaGACCa -3' miRNA: 3'- -GC-CGCC-GUCGaCGCGGCa------------CGUG--CUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 155614 | 0.66 | 0.797226 |
Target: 5'- cCGGC-GCGGCgccgggugacgcaGUGUCGUaCGCGACCg -3' miRNA: 3'- -GCCGcCGUCGa------------CGCGGCAcGUGCUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 153616 | 0.66 | 0.795547 |
Target: 5'- uGGCGcucaGCAGCuccUGCGCCagcgggugcgucucgGUggagcgcuGCACGGCCg -3' miRNA: 3'- gCCGC----CGUCG---ACGCGG---------------CA--------CGUGCUGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 213462 | 0.66 | 0.792174 |
Target: 5'- aGGCGucGCAcGUcaugacgGCGCCgGUGCACG-CCa -3' miRNA: 3'- gCCGC--CGU-CGa------CGCGG-CACGUGCuGG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 168423 | 0.66 | 0.792174 |
Target: 5'- gGGCgGGCGGCaGgGCCGcgGCgGCGGgCg -3' miRNA: 3'- gCCG-CCGUCGaCgCGGCa-CG-UGCUgG- -5' |
|||||||
13978 | 3' | -61.8 | NC_003521.1 | + | 87923 | 0.66 | 0.792174 |
Target: 5'- uGGCuGGCcGCcGCGCCGgGCAUG-CUc -3' miRNA: 3'- gCCG-CCGuCGaCGCGGCaCGUGCuGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home