miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 100500 0.66 0.800568
Target:  5'- aGGUGGCAccGCggGCGUCGgacggUGCACGGu- -3'
miRNA:   3'- gCCGCCGU--CGa-CGCGGC-----ACGUGCUgg -5'
13978 3' -61.8 NC_003521.1 + 196692 0.66 0.800568
Target:  5'- -cGCGGCuGUUGCGguaGUGguUGGCCa -3'
miRNA:   3'- gcCGCCGuCGACGCgg-CACguGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 74378 0.66 0.800568
Target:  5'- gCGGCGaCGGCU-CGCCcucgaucuacacGUGCguggACGACCu -3'
miRNA:   3'- -GCCGCcGUCGAcGCGG------------CACG----UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 60747 0.66 0.800568
Target:  5'- aCGGCGGCGGCaGuCGCCGcGggagaaucccCGCcGCCu -3'
miRNA:   3'- -GCCGCCGUCGaC-GCGGCaC----------GUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 100423 0.66 0.800568
Target:  5'- uGGUGGUgagaagaagcGGCgGCGCuCGggaGCAgGGCCg -3'
miRNA:   3'- gCCGCCG----------UCGaCGCG-GCa--CGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 154668 0.66 0.800568
Target:  5'- aGGcCGGCAGCgagaCGCuggaggcuaccgCGUGUGCGACg -3'
miRNA:   3'- gCC-GCCGUCGac--GCG------------GCACGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 137304 0.66 0.800568
Target:  5'- gGGUGGC-GCgGCuGCUGcGCGgCGACCc -3'
miRNA:   3'- gCCGCCGuCGaCG-CGGCaCGU-GCUGG- -5'
13978 3' -61.8 NC_003521.1 + 95440 0.66 0.800568
Target:  5'- aGGCccaGGCcgucgcgcaccGGCUcGCGcCCGUGCAucacguggcacuCGACCa -3'
miRNA:   3'- gCCG---CCG-----------UCGA-CGC-GGCACGU------------GCUGG- -5'
13978 3' -61.8 NC_003521.1 + 89148 0.66 0.800568
Target:  5'- aCGGaccgcaagacccUGGaCGGCUGgGCCGUGgGCcuGGCCc -3'
miRNA:   3'- -GCC------------GCC-GUCGACgCGGCACgUG--CUGG- -5'
13978 3' -61.8 NC_003521.1 + 117219 0.66 0.800568
Target:  5'- aCGGCGGCuGCcccUGCGaCGcaaggGCACGcAUCa -3'
miRNA:   3'- -GCCGCCGuCG---ACGCgGCa----CGUGC-UGG- -5'
13978 3' -61.8 NC_003521.1 + 46190 0.66 0.800568
Target:  5'- gGGCuGCAcgguGCUgGUGUCGUGCGCG-CUg -3'
miRNA:   3'- gCCGcCGU----CGA-CGCGGCACGUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 87402 0.66 0.800568
Target:  5'- cCGGCuGCuGCUGaccaCGCCGgugGCGC-ACCu -3'
miRNA:   3'- -GCCGcCGuCGAC----GCGGCa--CGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 1565 0.66 0.798063
Target:  5'- uCGGCGccacacccgccgucGCuGCUGacgGCCGUGCAgcGCCa -3'
miRNA:   3'- -GCCGC--------------CGuCGACg--CGGCACGUgcUGG- -5'
13978 3' -61.8 NC_003521.1 + 201792 0.66 0.798063
Target:  5'- uCGGCGccacacccgccgucGCuGCUGacgGCCGUGCAgcGCCa -3'
miRNA:   3'- -GCCGC--------------CGuCGACg--CGGCACGUgcUGG- -5'
13978 3' -61.8 NC_003521.1 + 155614 0.66 0.797226
Target:  5'- cCGGC-GCGGCgccgggugacgcaGUGUCGUaCGCGACCg -3'
miRNA:   3'- -GCCGcCGUCGa------------CGCGGCAcGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 111595 0.66 0.797226
Target:  5'- gCGcGUGGcCAGCgGCGCCGgacugcccaccacGCGCcaGACCa -3'
miRNA:   3'- -GC-CGCC-GUCGaCGCGGCa------------CGUG--CUGG- -5'
13978 3' -61.8 NC_003521.1 + 153616 0.66 0.795547
Target:  5'- uGGCGcucaGCAGCuccUGCGCCagcgggugcgucucgGUggagcgcuGCACGGCCg -3'
miRNA:   3'- gCCGC----CGUCG---ACGCGG---------------CA--------CGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 87923 0.66 0.792174
Target:  5'- uGGCuGGCcGCcGCGCCGgGCAUG-CUc -3'
miRNA:   3'- gCCG-CCGuCGaCGCGGCaCGUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 206184 0.66 0.792174
Target:  5'- gGGCGGCca--GgGCCGcgaGCACGAUCa -3'
miRNA:   3'- gCCGCCGucgaCgCGGCa--CGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 213462 0.66 0.792174
Target:  5'- aGGCGucGCAcGUcaugacgGCGCCgGUGCACG-CCa -3'
miRNA:   3'- gCCGC--CGU-CGa------CGCGG-CACGUGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.