miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 5' -54.2 NC_003521.1 + 206285 0.66 0.988755
Target:  5'- aGGccgaacuCUGUCGCcgcucGCGCGuCUCGgCCCGCg -3'
miRNA:   3'- aCCu------GAUAGUGc----UGCGU-GAGU-GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 129939 0.66 0.988755
Target:  5'- cUGG-CcGagACGGCGCAgUUCugCCGCg -3'
miRNA:   3'- -ACCuGaUagUGCUGCGU-GAGugGGCG- -5'
13978 5' -54.2 NC_003521.1 + 201585 0.66 0.988755
Target:  5'- gGGGCUGaacgccCGCGGgccacCGCugUCcccgaGCCCGCg -3'
miRNA:   3'- aCCUGAUa-----GUGCU-----GCGugAG-----UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 96470 0.66 0.988755
Target:  5'- cGGugUAgaaGCGGCgaaagGCGCgCACCCGg -3'
miRNA:   3'- aCCugAUag-UGCUG-----CGUGaGUGGGCg -5'
13978 5' -54.2 NC_003521.1 + 28385 0.66 0.988755
Target:  5'- gUGGcACgUGUCGCGACGCcuggccaucAUggGCCUGCu -3'
miRNA:   3'- -ACC-UG-AUAGUGCUGCG---------UGagUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 110458 0.66 0.988755
Target:  5'- gUGGcGCUGa-GCG-CGCACggCGCCUGCg -3'
miRNA:   3'- -ACC-UGAUagUGCuGCGUGa-GUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 145426 0.66 0.988755
Target:  5'- cGGGCUugCugGGCGC-CUCgguggACCUGUg -3'
miRNA:   3'- aCCUGAuaGugCUGCGuGAG-----UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 113076 0.66 0.988755
Target:  5'- cGGGCUA-CGaGGCGCAgaCGgCCGCc -3'
miRNA:   3'- aCCUGAUaGUgCUGCGUgaGUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 143525 0.66 0.988755
Target:  5'- cGGGCcugauccgCACG-CGCGC-CGCCgGCg -3'
miRNA:   3'- aCCUGaua-----GUGCuGCGUGaGUGGgCG- -5'
13978 5' -54.2 NC_003521.1 + 54521 0.66 0.988755
Target:  5'- aGGAuCUG-CACGGCGCcGCUgggGCCCGg -3'
miRNA:   3'- aCCU-GAUaGUGCUGCG-UGAg--UGGGCg -5'
13978 5' -54.2 NC_003521.1 + 99235 0.66 0.988755
Target:  5'- aGGGCUGUagcugACGguGCGCGCgucgUCGCgCGCg -3'
miRNA:   3'- aCCUGAUAg----UGC--UGCGUG----AGUGgGCG- -5'
13978 5' -54.2 NC_003521.1 + 225571 0.66 0.988617
Target:  5'- gGGACccgUGUCguccuggcgcucgGCGGCcucGCGCUCGgCCGCc -3'
miRNA:   3'- aCCUG---AUAG-------------UGCUG---CGUGAGUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 190768 0.66 0.988617
Target:  5'- gGGACUcgCucgggaggccuACGACGCcCUCAaaaaggcCCUGCu -3'
miRNA:   3'- aCCUGAuaG-----------UGCUGCGuGAGU-------GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 118742 0.66 0.987909
Target:  5'- cGGGCUgcagguugcuggugaGUCgGCGgccguGCGCACgUCGCCCuGCa -3'
miRNA:   3'- aCCUGA---------------UAG-UGC-----UGCGUG-AGUGGG-CG- -5'
13978 5' -54.2 NC_003521.1 + 120569 0.66 0.987318
Target:  5'- uUGGG-UGUCgagGCGAUGCACggcgCGgCCGCc -3'
miRNA:   3'- -ACCUgAUAG---UGCUGCGUGa---GUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 128013 0.66 0.987318
Target:  5'- cGGGggGUCGCGGCcgucccagaGCGCgUGCCCGUa -3'
miRNA:   3'- aCCUgaUAGUGCUG---------CGUGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 222341 0.66 0.987318
Target:  5'- cGGGCagcUCcuccaGGCGaCACUCGCCgCGCa -3'
miRNA:   3'- aCCUGau-AGug---CUGC-GUGAGUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 155259 0.66 0.987318
Target:  5'- gGGGCggcggcgGCGGCGC-CUCagGCCCGUc -3'
miRNA:   3'- aCCUGauag---UGCUGCGuGAG--UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 83763 0.66 0.987318
Target:  5'- gGGACaggGUgGCGGCGC-C-C-CCCGCc -3'
miRNA:   3'- aCCUGa--UAgUGCUGCGuGaGuGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 63086 0.66 0.987318
Target:  5'- --aGCUG-CGcCGGCGCGCU-GCCCGCc -3'
miRNA:   3'- accUGAUaGU-GCUGCGUGAgUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.