miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 138031 0.66 0.791408
Target:  5'- -cCGAGCUggcggcCGCCggcGCCGUcaucgCGCAGCc -3'
miRNA:   3'- caGCUCGA------GCGGa--CGGCGa----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 95242 0.66 0.791408
Target:  5'- -aCG-GC-CGCCgcgucgUGCCGC-CGCAGCa -3'
miRNA:   3'- caGCuCGaGCGG------ACGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 2072 0.66 0.791408
Target:  5'- uGUCGAGCUcCGCCggcccgacuucUGCUGCUggaacugcugcCGguGCu -3'
miRNA:   3'- -CAGCUCGA-GCGG-----------ACGGCGA-----------GCguCGc -5'
13979 5' -61.4 NC_003521.1 + 202534 0.66 0.791408
Target:  5'- -aCGAGCUCucgcaCCUGCUGCgCGcCGGCc -3'
miRNA:   3'- caGCUCGAGc----GGACGGCGaGC-GUCGc -5'
13979 5' -61.4 NC_003521.1 + 157971 0.66 0.791408
Target:  5'- -aCGGcGCUgguagcgaCGCC-GCCGCcCGCGGCGa -3'
miRNA:   3'- caGCU-CGA--------GCGGaCGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 40311 0.66 0.791408
Target:  5'- cGUUGAGC-C-CCUugGCCaGCUCGguGCGc -3'
miRNA:   3'- -CAGCUCGaGcGGA--CGG-CGAGCguCGC- -5'
13979 5' -61.4 NC_003521.1 + 202300 0.66 0.791408
Target:  5'- uGUCGAGCUcCGCCggcccgacuucUGCUGCUggaacugcugcCGguGCu -3'
miRNA:   3'- -CAGCUCGA-GCGG-----------ACGGCGA-----------GCguCGc -5'
13979 5' -61.4 NC_003521.1 + 104682 0.66 0.791408
Target:  5'- --gGAGCUCGaggggGCCGUggGCGGCGu -3'
miRNA:   3'- cagCUCGAGCgga--CGGCGagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 38915 0.66 0.791408
Target:  5'- uUCGGaugccGC-CGCCUGCUGUUCGgucauCGGCGg -3'
miRNA:   3'- cAGCU-----CGaGCGGACGGCGAGC-----GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 109988 0.66 0.791408
Target:  5'- --aGGGCg-GCCUGCCGgUC-CAGCa -3'
miRNA:   3'- cagCUCGagCGGACGGCgAGcGUCGc -5'
13979 5' -61.4 NC_003521.1 + 2306 0.66 0.791408
Target:  5'- -aCGAGCUCucgcaCCUGCUGCgCGcCGGCc -3'
miRNA:   3'- caGCUCGAGc----GGACGGCGaGC-GUCGc -5'
13979 5' -61.4 NC_003521.1 + 53211 0.66 0.782777
Target:  5'- -gUGAGCUCGCCggggaGuCCGCgggCGaAGCGa -3'
miRNA:   3'- caGCUCGAGCGGa----C-GGCGa--GCgUCGC- -5'
13979 5' -61.4 NC_003521.1 + 89854 0.66 0.782777
Target:  5'- uGUCG-GC-CGCCagcGCCGCgUCGC-GCGa -3'
miRNA:   3'- -CAGCuCGaGCGGa--CGGCG-AGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 174458 0.66 0.782777
Target:  5'- uGUCGcuGCUCGCC-GCCGgccaCGCgAGCGg -3'
miRNA:   3'- -CAGCu-CGAGCGGaCGGCga--GCG-UCGC- -5'
13979 5' -61.4 NC_003521.1 + 40396 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5'
13979 5' -61.4 NC_003521.1 + 142341 0.66 0.782777
Target:  5'- -gCGAgGC-CGCCgccacgGCCGC-CGCGGCc -3'
miRNA:   3'- caGCU-CGaGCGGa-----CGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 74 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5'
13979 5' -61.4 NC_003521.1 + 27253 0.66 0.782777
Target:  5'- -aCGGGCUCGCCgaugaugcgGCCcacgaaggccagGCgggucUCGCAGCa -3'
miRNA:   3'- caGCUCGAGCGGa--------CGG------------CG-----AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 6375 0.66 0.782777
Target:  5'- gGUCGGGgUCGCggaggggcGCCGCagcuacCGCGGCGg -3'
miRNA:   3'- -CAGCUCgAGCGga------CGGCGa-----GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 240623 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.