miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 149769 0.66 0.6803
Target:  5'- --cGGCCGCGCGGUacgccucaacgccacGGcGuuccgcgaACGGccGGCCg -3'
miRNA:   3'- uaaCCGGCGCGCCG---------------CC-C--------UGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 13650 0.66 0.6803
Target:  5'- --gGGCgGCGgaGGCGGGagaagaggcucggagAgGGUGGCg -3'
miRNA:   3'- uaaCCGgCGCg-CCGCCC---------------UgCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 124597 0.66 0.6803
Target:  5'- -aUGGCCGacgaggacgacgaaGCGGCGGcGACGGcgacGUCu -3'
miRNA:   3'- uaACCGGCg-------------CGCCGCC-CUGCCac--CGG- -5'
13980 3' -64.3 NC_003521.1 + 58408 0.66 0.676562
Target:  5'- --cGGCCGCgugauGCGGCGGuuGACGaa-GCCg -3'
miRNA:   3'- uaaCCGGCG-----CGCCGCC--CUGCcacCGG- -5'
13980 3' -64.3 NC_003521.1 + 155249 0.66 0.676562
Target:  5'- -gUGGUgGUgggggGCGGCGGcGGCGGcgccucaGGCCc -3'
miRNA:   3'- uaACCGgCG-----CGCCGCC-CUGCCa------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 116580 0.66 0.676562
Target:  5'- ---uGCCGCGCGGCGacccaacccuucGGAaucgggccCGGUcgcgGGCCa -3'
miRNA:   3'- uaacCGGCGCGCCGC------------CCU--------GCCA----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 198414 0.66 0.676562
Target:  5'- -gUGGCUucCGuuGUGGuGACGGUGGCg -3'
miRNA:   3'- uaACCGGc-GCgcCGCC-CUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 224429 0.66 0.676562
Target:  5'- --gGcGCUGCGUGGUGGGcgaGCGGUccaGGUg -3'
miRNA:   3'- uaaC-CGGCGCGCCGCCC---UGCCA---CCGg -5'
13980 3' -64.3 NC_003521.1 + 42613 0.66 0.676562
Target:  5'- --cGGCCGC-CGGCGGcGCcGUcGCCg -3'
miRNA:   3'- uaaCCGGCGcGCCGCCcUGcCAcCGG- -5'
13980 3' -64.3 NC_003521.1 + 117494 0.66 0.676562
Target:  5'- --gGGCCuGUcCGGCGGGGCGuacGGCg -3'
miRNA:   3'- uaaCCGG-CGcGCCGCCCUGCca-CCGg -5'
13980 3' -64.3 NC_003521.1 + 188444 0.66 0.675627
Target:  5'- --aGGCCGCGaCGGCGGucaggauGACGc--GCCu -3'
miRNA:   3'- uaaCCGGCGC-GCCGCC-------CUGCcacCGG- -5'
13980 3' -64.3 NC_003521.1 + 125298 0.66 0.675627
Target:  5'- --cGaGCCGCgucguucgcggacGCGGC-GGugGGUccGGCCa -3'
miRNA:   3'- uaaC-CGGCG-------------CGCCGcCCugCCA--CCGG- -5'
13980 3' -64.3 NC_003521.1 + 156887 0.66 0.667199
Target:  5'- --cGGCCGCuGCccgauGGCacggGGGGCGacgGGCCg -3'
miRNA:   3'- uaaCCGGCG-CG-----CCG----CCCUGCca-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 129668 0.66 0.667199
Target:  5'- --cGGCCGCGCuauGC-GGACcgucccGUGGCCc -3'
miRNA:   3'- uaaCCGGCGCGc--CGcCCUGc-----CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 87785 0.66 0.667199
Target:  5'- --gGGCCGCcucguCGGUcucGGGCGGccugGGCCa -3'
miRNA:   3'- uaaCCGGCGc----GCCGc--CCUGCCa---CCGG- -5'
13980 3' -64.3 NC_003521.1 + 113839 0.66 0.667199
Target:  5'- --gGGCaGCgGCaGCGGGGCGGccGGCg -3'
miRNA:   3'- uaaCCGgCG-CGcCGCCCUGCCa-CCGg -5'
13980 3' -64.3 NC_003521.1 + 139439 0.66 0.667199
Target:  5'- -gUGGCCGUcaaGCGGCGcGACGGcucGCg -3'
miRNA:   3'- uaACCGGCG---CGCCGCcCUGCCac-CGg -5'
13980 3' -64.3 NC_003521.1 + 40872 0.66 0.667199
Target:  5'- -gUGaGCCGCGgaGGgaagggacCGGGGCGGgGGUCa -3'
miRNA:   3'- uaAC-CGGCGCg-CC--------GCCCUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 109852 0.66 0.667199
Target:  5'- --cGGCCcgacaacgacGUGacgGGCGGcGGCGG-GGCCa -3'
miRNA:   3'- uaaCCGG----------CGCg--CCGCC-CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 197157 0.66 0.667199
Target:  5'- -cUGGaaguuCCGCGCugggccuggcagGGCuGGaGGCGGUGGCg -3'
miRNA:   3'- uaACC-----GGCGCG------------CCG-CC-CUGCCACCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.