miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 48926 0.66 0.943108
Target:  5'- ---cGGUGUccGUGaaggaCGUGGCGCCGccGCCc -3'
miRNA:   3'- uauuUCACG--CACg----GCACCGUGGC--CGG- -5'
13980 5' -56.7 NC_003521.1 + 184968 0.66 0.943108
Target:  5'- ---cGGUGCGgGCCagcGUGGaCcugugcaagGCCGGCCu -3'
miRNA:   3'- uauuUCACGCaCGG---CACC-G---------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 125419 0.66 0.943108
Target:  5'- --uGAGUcCGgagGCCGUGGCgGCCGcCCg -3'
miRNA:   3'- uauUUCAcGCa--CGGCACCG-UGGCcGG- -5'
13980 5' -56.7 NC_003521.1 + 86267 0.66 0.943108
Target:  5'- cUGAGGUucugcGCGgcgaucaCCGUGGUGCCGGUg -3'
miRNA:   3'- uAUUUCA-----CGCac-----GGCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 107065 0.66 0.943108
Target:  5'- ------cGCGUccccggaaucGCCG-GGCcuGCCGGCCa -3'
miRNA:   3'- uauuucaCGCA----------CGGCaCCG--UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 210366 0.66 0.943108
Target:  5'- --cAGGUGCGcGUCaucGGCACCcucGGCCg -3'
miRNA:   3'- uauUUCACGCaCGGca-CCGUGG---CCGG- -5'
13980 5' -56.7 NC_003521.1 + 95136 0.66 0.943108
Target:  5'- gAUAGGGUaagGCGgccgcGCCGacGGCaaggagucgGCCGGCCg -3'
miRNA:   3'- -UAUUUCA---CGCa----CGGCa-CCG---------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 31722 0.66 0.943108
Target:  5'- ------cGCGUGCUG-GGaCGCCgcGGCCa -3'
miRNA:   3'- uauuucaCGCACGGCaCC-GUGG--CCGG- -5'
13980 5' -56.7 NC_003521.1 + 239764 0.66 0.938576
Target:  5'- -gAGAGcugGCGcagGUCgGUGGCcccgacGCCGGCCa -3'
miRNA:   3'- uaUUUCa--CGCa--CGG-CACCG------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 190535 0.66 0.938576
Target:  5'- -cGAGGUGCGgcgGCagcaGcGGCGgacCCGGCUg -3'
miRNA:   3'- uaUUUCACGCa--CGg---CaCCGU---GGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 39537 0.66 0.938576
Target:  5'- -gAGAGcugGCGcagGUCgGUGGCcccgacGCCGGCCa -3'
miRNA:   3'- uaUUUCa--CGCa--CGG-CACCG------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 89005 0.66 0.938576
Target:  5'- -aGAAGgacGCGga-CGUGGUggaacacguGCCGGCCa -3'
miRNA:   3'- uaUUUCa--CGCacgGCACCG---------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 73 0.66 0.938576
Target:  5'- ---cGGcgGCGUGCgGcGG-GCCGGCCg -3'
miRNA:   3'- uauuUCa-CGCACGgCaCCgUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 200301 0.66 0.938576
Target:  5'- ---cGGcgGCGUGCgGcGG-GCCGGCCg -3'
miRNA:   3'- uauuUCa-CGCACGgCaCCgUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 160775 0.66 0.938576
Target:  5'- ------cGCGUGCCGccggcGGCACgCGGgCg -3'
miRNA:   3'- uauuucaCGCACGGCa----CCGUG-GCCgG- -5'
13980 5' -56.7 NC_003521.1 + 37424 0.66 0.938576
Target:  5'- ------cGUGUGgCGcGGCGCCGaGCCu -3'
miRNA:   3'- uauuucaCGCACgGCaCCGUGGC-CGG- -5'
13980 5' -56.7 NC_003521.1 + 240622 0.66 0.938576
Target:  5'- ---cGGcgGCGUGCgGcGG-GCCGGCCg -3'
miRNA:   3'- uauuUCa-CGCACGgCaCCgUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 154648 0.66 0.933818
Target:  5'- --cAAGcaCGUGCCGcUGGCcgagGCCGGCa -3'
miRNA:   3'- uauUUCacGCACGGC-ACCG----UGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 49108 0.66 0.933818
Target:  5'- -cAAAGUGCGcguggUGaCCGcGGCGCCGcuGCUg -3'
miRNA:   3'- uaUUUCACGC-----AC-GGCaCCGUGGC--CGG- -5'
13980 5' -56.7 NC_003521.1 + 213738 0.66 0.933818
Target:  5'- ------gGCGccgcagaagGCCGUGGUGgCGGCCa -3'
miRNA:   3'- uauuucaCGCa--------CGGCACCGUgGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.