miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 3' -53.8 NC_003521.1 + 98540 0.66 0.992013
Target:  5'- cGCUgcagcgGCGGCGGGucccagcccgagcccGAGucGGCCGAGgaggaGCGGg -3'
miRNA:   3'- -CGAa-----UGCCGCUU---------------CUC--CCGGUUC-----UGCC- -5'
13981 3' -53.8 NC_003521.1 + 23201 0.66 0.991585
Target:  5'- ---cACGcCGAGGAGauggcGGCCGAGACGc -3'
miRNA:   3'- cgaaUGCcGCUUCUC-----CCGGUUCUGCc -5'
13981 3' -53.8 NC_003521.1 + 123204 0.66 0.991585
Target:  5'- cGCaUACGGCGcc--GGGU-AGGACGGg -3'
miRNA:   3'- -CGaAUGCCGCuucuCCCGgUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 91647 0.66 0.991585
Target:  5'- cGCcgGUGGCGAcGcGcGCCGAGACGGa -3'
miRNA:   3'- -CGaaUGCCGCUuCuCcCGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 44344 0.66 0.991585
Target:  5'- aGCcUGaggaGGCGGAacGGGCCGAGugccaGCGGa -3'
miRNA:   3'- -CGaAUg---CCGCUUcuCCCGGUUC-----UGCC- -5'
13981 3' -53.8 NC_003521.1 + 131099 0.66 0.991476
Target:  5'- gGCUccggACGGCGggGcGGcgcggcuGCCGGGAaGGg -3'
miRNA:   3'- -CGAa---UGCCGCuuCuCC-------CGGUUCUgCC- -5'
13981 3' -53.8 NC_003521.1 + 135625 0.66 0.991253
Target:  5'- aGCUcGCgGGCGGaucccacgaucggcGGGGGGCCcagcgucGGCGGc -3'
miRNA:   3'- -CGAaUG-CCGCU--------------UCUCCCGGuu-----CUGCC- -5'
13981 3' -53.8 NC_003521.1 + 18781 0.66 0.990438
Target:  5'- cGCagGCGGU--GGAGGGCCAGcGCu- -3'
miRNA:   3'- -CGaaUGCCGcuUCUCCCGGUUcUGcc -5'
13981 3' -53.8 NC_003521.1 + 118874 0.66 0.990438
Target:  5'- ---cACgGGCGAGGAGGuGCagaacguGACGGu -3'
miRNA:   3'- cgaaUG-CCGCUUCUCC-CGguu----CUGCC- -5'
13981 3' -53.8 NC_003521.1 + 128912 0.66 0.990438
Target:  5'- cGCUggaUGCGGUu--GAGGGCCu-GGCGc -3'
miRNA:   3'- -CGA---AUGCCGcuuCUCCCGGuuCUGCc -5'
13981 3' -53.8 NC_003521.1 + 216138 0.66 0.990438
Target:  5'- ---cGCGGCaGAGGAaGGCCAccuGGGCGc -3'
miRNA:   3'- cgaaUGCCG-CUUCUcCCGGU---UCUGCc -5'
13981 3' -53.8 NC_003521.1 + 188433 0.66 0.990438
Target:  5'- ---cGCGaCGAAGAaGGCCGcGACGGc -3'
miRNA:   3'- cgaaUGCcGCUUCUcCCGGUuCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 132991 0.66 0.990438
Target:  5'- ---aACGGgGGAccGGGGUUggGACGGg -3'
miRNA:   3'- cgaaUGCCgCUUc-UCCCGGuuCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 205699 0.66 0.990316
Target:  5'- cGCUcagucGCGGCGAAGuguuuacGGGGCUcGGGCc- -3'
miRNA:   3'- -CGAa----UGCCGCUUC-------UCCCGGuUCUGcc -5'
13981 3' -53.8 NC_003521.1 + 39451 0.66 0.99007
Target:  5'- aGCc--CGGCGccGAGGGCCGcgucgaaggauugcGGAuCGGc -3'
miRNA:   3'- -CGaauGCCGCuuCUCCCGGU--------------UCU-GCC- -5'
13981 3' -53.8 NC_003521.1 + 121917 0.66 0.989171
Target:  5'- ---cGCGGCGccgacGAGGGCgAGGACc- -3'
miRNA:   3'- cgaaUGCCGCuu---CUCCCGgUUCUGcc -5'
13981 3' -53.8 NC_003521.1 + 126202 0.66 0.989171
Target:  5'- ---gACGGCGAucauAGGGGcGCCcauGACGa -3'
miRNA:   3'- cgaaUGCCGCU----UCUCC-CGGuu-CUGCc -5'
13981 3' -53.8 NC_003521.1 + 184959 0.66 0.989171
Target:  5'- aCUUcGCGGCGguGcGGGCCAGcGugGa -3'
miRNA:   3'- cGAA-UGCCGCuuCuCCCGGUU-CugCc -5'
13981 3' -53.8 NC_003521.1 + 86252 0.66 0.989171
Target:  5'- cGUgcAgGGCGAAGucGGCCGgcgAGGCGa -3'
miRNA:   3'- -CGaaUgCCGCUUCucCCGGU---UCUGCc -5'
13981 3' -53.8 NC_003521.1 + 142939 0.66 0.989171
Target:  5'- ---aGCGGCGGucAGGGUCA--GCGGg -3'
miRNA:   3'- cgaaUGCCGCUucUCCCGGUucUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.