Results 1 - 20 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13981 | 3' | -53.8 | NC_003521.1 | + | 98540 | 0.66 | 0.992013 |
Target: 5'- cGCUgcagcgGCGGCGGGucccagcccgagcccGAGucGGCCGAGgaggaGCGGg -3' miRNA: 3'- -CGAa-----UGCCGCUU---------------CUC--CCGGUUC-----UGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 44344 | 0.66 | 0.991585 |
Target: 5'- aGCcUGaggaGGCGGAacGGGCCGAGugccaGCGGa -3' miRNA: 3'- -CGaAUg---CCGCUUcuCCCGGUUC-----UGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 123204 | 0.66 | 0.991585 |
Target: 5'- cGCaUACGGCGcc--GGGU-AGGACGGg -3' miRNA: 3'- -CGaAUGCCGCuucuCCCGgUUCUGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 23201 | 0.66 | 0.991585 |
Target: 5'- ---cACGcCGAGGAGauggcGGCCGAGACGc -3' miRNA: 3'- cgaaUGCcGCUUCUC-----CCGGUUCUGCc -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 91647 | 0.66 | 0.991585 |
Target: 5'- cGCcgGUGGCGAcGcGcGCCGAGACGGa -3' miRNA: 3'- -CGaaUGCCGCUuCuCcCGGUUCUGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 131099 | 0.66 | 0.991476 |
Target: 5'- gGCUccggACGGCGggGcGGcgcggcuGCCGGGAaGGg -3' miRNA: 3'- -CGAa---UGCCGCuuCuCC-------CGGUUCUgCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 135625 | 0.66 | 0.991253 |
Target: 5'- aGCUcGCgGGCGGaucccacgaucggcGGGGGGCCcagcgucGGCGGc -3' miRNA: 3'- -CGAaUG-CCGCU--------------UCUCCCGGuu-----CUGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 132991 | 0.66 | 0.990438 |
Target: 5'- ---aACGGgGGAccGGGGUUggGACGGg -3' miRNA: 3'- cgaaUGCCgCUUc-UCCCGGuuCUGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 18781 | 0.66 | 0.990438 |
Target: 5'- cGCagGCGGU--GGAGGGCCAGcGCu- -3' miRNA: 3'- -CGaaUGCCGcuUCUCCCGGUUcUGcc -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 216138 | 0.66 | 0.990438 |
Target: 5'- ---cGCGGCaGAGGAaGGCCAccuGGGCGc -3' miRNA: 3'- cgaaUGCCG-CUUCUcCCGGU---UCUGCc -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 128912 | 0.66 | 0.990438 |
Target: 5'- cGCUggaUGCGGUu--GAGGGCCu-GGCGc -3' miRNA: 3'- -CGA---AUGCCGcuuCUCCCGGuuCUGCc -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 188433 | 0.66 | 0.990438 |
Target: 5'- ---cGCGaCGAAGAaGGCCGcGACGGc -3' miRNA: 3'- cgaaUGCcGCUUCUcCCGGUuCUGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 118874 | 0.66 | 0.990438 |
Target: 5'- ---cACgGGCGAGGAGGuGCagaacguGACGGu -3' miRNA: 3'- cgaaUG-CCGCUUCUCC-CGguu----CUGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 205699 | 0.66 | 0.990316 |
Target: 5'- cGCUcagucGCGGCGAAGuguuuacGGGGCUcGGGCc- -3' miRNA: 3'- -CGAa----UGCCGCUUC-------UCCCGGuUCUGcc -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 39451 | 0.66 | 0.99007 |
Target: 5'- aGCc--CGGCGccGAGGGCCGcgucgaaggauugcGGAuCGGc -3' miRNA: 3'- -CGaauGCCGCuuCUCCCGGU--------------UCU-GCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 126202 | 0.66 | 0.989171 |
Target: 5'- ---gACGGCGAucauAGGGGcGCCcauGACGa -3' miRNA: 3'- cgaaUGCCGCU----UCUCC-CGGuu-CUGCc -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 121917 | 0.66 | 0.989171 |
Target: 5'- ---cGCGGCGccgacGAGGGCgAGGACc- -3' miRNA: 3'- cgaaUGCCGCuu---CUCCCGgUUCUGcc -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 184959 | 0.66 | 0.989171 |
Target: 5'- aCUUcGCGGCGguGcGGGCCAGcGugGa -3' miRNA: 3'- cGAA-UGCCGCuuCuCCCGGUU-CugCc -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 142939 | 0.66 | 0.989171 |
Target: 5'- ---aGCGGCGGucAGGGUCA--GCGGg -3' miRNA: 3'- cgaaUGCCGCUucUCCCGGUucUGCC- -5' |
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13981 | 3' | -53.8 | NC_003521.1 | + | 86252 | 0.66 | 0.989171 |
Target: 5'- cGUgcAgGGCGAAGucGGCCGgcgAGGCGa -3' miRNA: 3'- -CGaaUgCCGCUUCucCCGGU---UCUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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