miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 92372 0.66 0.883926
Target:  5'- cCGuCCGCUcgcCCGcUGCCGUCGCUccGCCg -3'
miRNA:   3'- -GC-GGUGGa--GGCaGCGGCAGCGAc-UGG- -5'
13981 5' -60.1 NC_003521.1 + 120678 0.66 0.883926
Target:  5'- uGCgCACCUCCGUggaggugaGCCGcaccucggUGCUGugCc -3'
miRNA:   3'- gCG-GUGGAGGCAg-------CGGCa-------GCGACugG- -5'
13981 5' -60.1 NC_003521.1 + 163125 0.66 0.883926
Target:  5'- cCGCCGCCUCCucgggcaucuGUCuGCCcucGUCcCUGAgCg -3'
miRNA:   3'- -GCGGUGGAGG----------CAG-CGG---CAGcGACUgG- -5'
13981 5' -60.1 NC_003521.1 + 23087 0.66 0.883926
Target:  5'- uGUCugCgUCCGUgGCCGg-GCggggGGCCg -3'
miRNA:   3'- gCGGugG-AGGCAgCGGCagCGa---CUGG- -5'
13981 5' -60.1 NC_003521.1 + 90257 0.66 0.883926
Target:  5'- aGCCGCg-CCGcCGCCGcCGCc-ACCa -3'
miRNA:   3'- gCGGUGgaGGCaGCGGCaGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 134531 0.66 0.883926
Target:  5'- cCGCCGCC-UgGUUGCUGUUGCccuCCa -3'
miRNA:   3'- -GCGGUGGaGgCAGCGGCAGCGacuGG- -5'
13981 5' -60.1 NC_003521.1 + 132476 0.66 0.883926
Target:  5'- aGCCGUCUUCGgagacCGCCGUCgGCgcgGACg -3'
miRNA:   3'- gCGGUGGAGGCa----GCGGCAG-CGa--CUGg -5'
13981 5' -60.1 NC_003521.1 + 207192 0.66 0.883926
Target:  5'- nCGCC-CCUCCacgGCCuGUUGCUGGgCg -3'
miRNA:   3'- -GCGGuGGAGGcagCGG-CAGCGACUgG- -5'
13981 5' -60.1 NC_003521.1 + 223314 0.66 0.883926
Target:  5'- gCGCCGCCgggCCGggaacCGCCGU----GACCg -3'
miRNA:   3'- -GCGGUGGa--GGCa----GCGGCAgcgaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 236525 0.66 0.883926
Target:  5'- cCGCCGucCCUCUGccUUGUCGUCGUUcGGCg -3'
miRNA:   3'- -GCGGU--GGAGGC--AGCGGCAGCGA-CUGg -5'
13981 5' -60.1 NC_003521.1 + 167688 0.66 0.883278
Target:  5'- cCGCCGCCgcugCCccCGCCGUgcaGCaccuccgUGGCCa -3'
miRNA:   3'- -GCGGUGGa---GGcaGCGGCAg--CG-------ACUGG- -5'
13981 5' -60.1 NC_003521.1 + 43807 0.66 0.882628
Target:  5'- gGCCGCCaugucgcagcagCCGggucaGCCGcCGCcGGCCg -3'
miRNA:   3'- gCGGUGGa-----------GGCag---CGGCaGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 99710 0.66 0.877359
Target:  5'- gGCCGCUUCUGcaggucgcaggCGUCGUCGCgcACCc -3'
miRNA:   3'- gCGGUGGAGGCa----------GCGGCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 79605 0.66 0.877359
Target:  5'- cCGCCGCCaUCGaacUUGCCGggGC-GACCg -3'
miRNA:   3'- -GCGGUGGaGGC---AGCGGCagCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 78925 0.66 0.877359
Target:  5'- aGCCGCgCUCCagcagguacUCGCCGaUCuuuCUGGCCa -3'
miRNA:   3'- gCGGUG-GAGGc--------AGCGGC-AGc--GACUGG- -5'
13981 5' -60.1 NC_003521.1 + 55887 0.66 0.877359
Target:  5'- aCGCUACCa-UG-CGCgGUCGCcGACCc -3'
miRNA:   3'- -GCGGUGGagGCaGCGgCAGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 28269 0.66 0.877359
Target:  5'- -aCCAcCCUCCcccUgGCCGUCGUgGGCCu -3'
miRNA:   3'- gcGGU-GGAGGc--AgCGGCAGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 113226 0.66 0.877359
Target:  5'- aGCCuacugGCCUUCGcgcacagcuacUCGCUGgugaCGCUGAUCg -3'
miRNA:   3'- gCGG-----UGGAGGC-----------AGCGGCa---GCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 62819 0.66 0.877359
Target:  5'- gGCCGCCUCCGUccuaccCGCCcuaccCGC--ACCg -3'
miRNA:   3'- gCGGUGGAGGCA------GCGGca---GCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 195846 0.66 0.877359
Target:  5'- -cCCGCCUCUGgcgucagCGCUGUCGCcucgcucucggGACUg -3'
miRNA:   3'- gcGGUGGAGGCa------GCGGCAGCGa----------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.