miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 3' -64.1 NC_003521.1 + 80152 0.66 0.689422
Target:  5'- uGCGCGUCCagC-CGCUgGa-GGGCCAg -3'
miRNA:   3'- -CGCGCAGGagGuGCGGgCggUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 131186 0.66 0.689422
Target:  5'- uCGCGU-CUCauguuCGCCCGCUacggcgagagGGGCCGg -3'
miRNA:   3'- cGCGCAgGAGgu---GCGGGCGG----------UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 129773 0.66 0.689422
Target:  5'- cCGCG-CCUgucCCGCGCacgugcgCGCCgAGGCCGa -3'
miRNA:   3'- cGCGCaGGA---GGUGCGg------GCGG-UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 201376 0.66 0.689422
Target:  5'- aCGCGgcCCUCgGCGCCgGgCUcGGCCGg -3'
miRNA:   3'- cGCGCa-GGAGgUGCGGgC-GGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 99806 0.66 0.689422
Target:  5'- gGCGCaguacggCCUCCACGU--GCUGGGCCu -3'
miRNA:   3'- -CGCGca-----GGAGGUGCGggCGGUCCGGu -5'
13983 3' -64.1 NC_003521.1 + 206614 0.66 0.689422
Target:  5'- cGgGCGcCgUCUACG-CCGCCcugguGGGCCAc -3'
miRNA:   3'- -CgCGCaGgAGGUGCgGGCGG-----UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 153453 0.66 0.683843
Target:  5'- cGCcuCGUCCUCCACcucgGCCUccuccucgggcuccgGCuCGGGCCGu -3'
miRNA:   3'- -CGc-GCAGGAGGUG----CGGG---------------CG-GUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 96638 0.66 0.680116
Target:  5'- uGC-CGUUCUCCAgCGCgCGgCAGGCg- -3'
miRNA:   3'- -CGcGCAGGAGGU-GCGgGCgGUCCGgu -5'
13983 3' -64.1 NC_003521.1 + 139381 0.66 0.680116
Target:  5'- aGCGcCGUgCUCUugGcCCCGCgGuGGUCGa -3'
miRNA:   3'- -CGC-GCAgGAGGugC-GGGCGgU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 129318 0.66 0.680116
Target:  5'- cGUGCG-CCgccgCCGCcaGCCCGCU-GGUCAg -3'
miRNA:   3'- -CGCGCaGGa---GGUG--CGGGCGGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 96057 0.66 0.680116
Target:  5'- gGCuCGUCgUCCcagacCGCCagcaGCCGGGUCAg -3'
miRNA:   3'- -CGcGCAGgAGGu----GCGGg---CGGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 16398 0.66 0.680116
Target:  5'- cGCuCGcCCaCCACGCagCGCCuGGCCGg -3'
miRNA:   3'- -CGcGCaGGaGGUGCGg-GCGGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 150447 0.66 0.680116
Target:  5'- cGCGCccgggGUCCUCCugGUCuggggcggcgagCGCCuggugGGGCCc -3'
miRNA:   3'- -CGCG-----CAGGAGGugCGG------------GCGG-----UCCGGu -5'
13983 3' -64.1 NC_003521.1 + 47536 0.66 0.680116
Target:  5'- cGCGCcgaCUCCgACGCCCGuCCcGGCa- -3'
miRNA:   3'- -CGCGcagGAGG-UGCGGGC-GGuCCGgu -5'
13983 3' -64.1 NC_003521.1 + 102882 0.66 0.680116
Target:  5'- cGCGCucgggcUCCUcgggcagggaaCCGCGaCCCGCCAG-CCAc -3'
miRNA:   3'- -CGCGc-----AGGA-----------GGUGC-GGGCGGUCcGGU- -5'
13983 3' -64.1 NC_003521.1 + 122932 0.66 0.680116
Target:  5'- -aGCuUUUUCCGCGCCCGgCCGugcucGGCCu -3'
miRNA:   3'- cgCGcAGGAGGUGCGGGC-GGU-----CCGGu -5'
13983 3' -64.1 NC_003521.1 + 69858 0.66 0.680116
Target:  5'- cGCGCcgaugaggCCgCCGCGCagcgccaCGcCCAGGCCAu -3'
miRNA:   3'- -CGCGca------GGaGGUGCGg------GC-GGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 142374 0.66 0.680116
Target:  5'- cCGCcUCCUCCAacguaGCCCaggagGCCGcGGCCc -3'
miRNA:   3'- cGCGcAGGAGGUg----CGGG-----CGGU-CCGGu -5'
13983 3' -64.1 NC_003521.1 + 18041 0.66 0.670775
Target:  5'- cGUGCagaaguUCCUCUGCGCCgaccccaccgaCGCCGuGGCCGu -3'
miRNA:   3'- -CGCGc-----AGGAGGUGCGG-----------GCGGU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 153178 0.66 0.670775
Target:  5'- gGCuGCG-CCUCCA-GCCUguGCgAGGCCu -3'
miRNA:   3'- -CG-CGCaGGAGGUgCGGG--CGgUCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.