miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 5' -56.6 NC_003521.1 + 7988 0.66 0.954008
Target:  5'- --cGcGGCGGCGGGGGaGGuaccGGGGCAgCGc -3'
miRNA:   3'- gaaC-CUGUCGCUCUC-CU----UCCCGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 113838 0.66 0.954008
Target:  5'- --cGGGCAGCGGcAGc-GGGGCgGCCGg -3'
miRNA:   3'- gaaCCUGUCGCUcUCcuUCCCG-UGGC- -5'
13983 5' -56.6 NC_003521.1 + 167902 0.66 0.954008
Target:  5'- gUUGuAgAGCGGcAGGuGGGGCGCCGc -3'
miRNA:   3'- gAACcUgUCGCUcUCCuUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 105414 0.66 0.954008
Target:  5'- --cGuGACGGCGAuGGGGAuGGGGCAa-- -3'
miRNA:   3'- gaaC-CUGUCGCU-CUCCU-UCCCGUggc -5'
13983 5' -56.6 NC_003521.1 + 83698 0.66 0.954008
Target:  5'- -gUGGACGcGCGAGcGGGcguccaAGGGguCCa -3'
miRNA:   3'- gaACCUGU-CGCUCuCCU------UCCCguGGc -5'
13983 5' -56.6 NC_003521.1 + 212161 0.66 0.954008
Target:  5'- --gGGAaccagaGGUGcGAGGuuAGGGGCACCa -3'
miRNA:   3'- gaaCCUg-----UCGCuCUCC--UUCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 124057 0.66 0.953626
Target:  5'- --cGcGGCGGCGgcccacgcugcacAGAGccacguguuuGAAGGGCGCCGa -3'
miRNA:   3'- gaaC-CUGUCGC-------------UCUC----------CUUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 210096 0.66 0.950089
Target:  5'- --cGGACAGacuGAGAGGAguAGGGUGaggaCGu -3'
miRNA:   3'- gaaCCUGUCg--CUCUCCU--UCCCGUg---GC- -5'
13983 5' -56.6 NC_003521.1 + 35996 0.66 0.950089
Target:  5'- gCUUGGuCAGCGAcggcGAcGGAGGuGGCgGCCc -3'
miRNA:   3'- -GAACCuGUCGCU----CU-CCUUC-CCG-UGGc -5'
13983 5' -56.6 NC_003521.1 + 172386 0.66 0.950089
Target:  5'- ---cGGCAcGCG-GuuGAGGGGCGCCGg -3'
miRNA:   3'- gaacCUGU-CGCuCucCUUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 198283 0.66 0.949685
Target:  5'- --cGGGCGucGCG-GAGGAccgcuggGGGGCuCCGg -3'
miRNA:   3'- gaaCCUGU--CGCuCUCCU-------UCCCGuGGC- -5'
13983 5' -56.6 NC_003521.1 + 180888 0.66 0.945954
Target:  5'- --cGGAgaagucCAGCGAGAGGuGGGaGC-CCa -3'
miRNA:   3'- gaaCCU------GUCGCUCUCCuUCC-CGuGGc -5'
13983 5' -56.6 NC_003521.1 + 169680 0.66 0.945954
Target:  5'- --aGGcaACAGC-AGAGGAGGaGGCGgCGa -3'
miRNA:   3'- gaaCC--UGUCGcUCUCCUUC-CCGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 28467 0.66 0.945954
Target:  5'- cCUUGGGCggugcaccAGCGGGuGGugauGGGCgugACCGu -3'
miRNA:   3'- -GAACCUG--------UCGCUCuCCuu--CCCG---UGGC- -5'
13983 5' -56.6 NC_003521.1 + 167659 0.66 0.945954
Target:  5'- -gUGGACAG-GAGAGGAGugacgugcucGcGGUugCGg -3'
miRNA:   3'- gaACCUGUCgCUCUCCUU----------C-CCGugGC- -5'
13983 5' -56.6 NC_003521.1 + 130026 0.66 0.945954
Target:  5'- -cUGGcuuuCAGCGucauGGAGGGGCACg- -3'
miRNA:   3'- gaACCu---GUCGCucu-CCUUCCCGUGgc -5'
13983 5' -56.6 NC_003521.1 + 177900 0.66 0.9416
Target:  5'- --cGGAacgagcggGGCGAGcGGGAGGGCGUCGu -3'
miRNA:   3'- gaaCCUg-------UCGCUCuCCUUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 172349 0.66 0.9416
Target:  5'- -gUGGcACacgucgGGCGGGuGGGucacGGGCACCGu -3'
miRNA:   3'- gaACC-UG------UCGCUCuCCUu---CCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 167750 0.66 0.9416
Target:  5'- -gUGGcCGGCG-GAGcuGAGGGuCACCGa -3'
miRNA:   3'- gaACCuGUCGCuCUCc-UUCCC-GUGGC- -5'
13983 5' -56.6 NC_003521.1 + 235585 0.66 0.937025
Target:  5'- --gGGACGuGCGGGAGGAcgAGaGGCGgacUCGg -3'
miRNA:   3'- gaaCCUGU-CGCUCUCCU--UC-CCGU---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.