miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 98148 0.66 0.993057
Target:  5'- aGCUGCUGccGCCGUC--GCUGCUGa- -3'
miRNA:   3'- -CGAUGGCaaUGGCAGcuUGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 236552 0.66 0.993057
Target:  5'- --cGgCGUcGCuCGUCGGcuCCGCCGUCc -3'
miRNA:   3'- cgaUgGCAaUG-GCAGCUu-GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 22118 0.66 0.993057
Target:  5'- cGCcGCCGccGCCGUCuccuCCGCCuUCg -3'
miRNA:   3'- -CGaUGGCaaUGGCAGcuu-GGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 170284 0.66 0.993057
Target:  5'- gGCUGCUGUgucgGCCGgcCGAGCgcgagGCgGUCa -3'
miRNA:   3'- -CGAUGGCAa---UGGCa-GCUUGg----CGgCAG- -5'
13984 5' -53.7 NC_003521.1 + 99437 0.66 0.993057
Target:  5'- cCU-CCGUUGCUGUCGucaucgggcACCG-CGUCa -3'
miRNA:   3'- cGAuGGCAAUGGCAGCu--------UGGCgGCAG- -5'
13984 5' -53.7 NC_003521.1 + 1149 0.66 0.993057
Target:  5'- cGCUGCCGUccCCGg-GAGCCacggcGCCGcCu -3'
miRNA:   3'- -CGAUGGCAauGGCagCUUGG-----CGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 49817 0.66 0.993057
Target:  5'- gGCUgggcGCCGUgcagugcGCCGUgCaGACgGCCGUCc -3'
miRNA:   3'- -CGA----UGGCAa------UGGCA-GcUUGgCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 6400 0.66 0.993057
Target:  5'- aGCUACCGcgGCgG-CGAcgggucuuGCCGCC-UCg -3'
miRNA:   3'- -CGAUGGCaaUGgCaGCU--------UGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 129716 0.66 0.993057
Target:  5'- uCUGCCGgccgcggcCCGUCGAcGCgagcgcguccgCGCCGUCu -3'
miRNA:   3'- cGAUGGCaau-----GGCAGCU-UG-----------GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 201377 0.66 0.993057
Target:  5'- cGCUGCCGUccCCGg-GAGCCacggcGCCGcCu -3'
miRNA:   3'- -CGAUGGCAauGGCagCUUGG-----CGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 188614 0.66 0.993057
Target:  5'- cCUACCGgccccgUACUGUCugauGAGCuCGCCGcCc -3'
miRNA:   3'- cGAUGGCa-----AUGGCAG----CUUG-GCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 137811 0.66 0.993057
Target:  5'- gGCUACCG-UACCGaUgGAGCgaGCC-UCa -3'
miRNA:   3'- -CGAUGGCaAUGGC-AgCUUGg-CGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 76914 0.66 0.992478
Target:  5'- cGCUGCCGccGcacccgaguaacgcaCCGUCGGcaccuGCCuCCGUCg -3'
miRNA:   3'- -CGAUGGCaaU---------------GGCAGCU-----UGGcGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 11518 0.66 0.992072
Target:  5'- cGCU-CCGcgcACCGUCGacAugCGCCaGUCc -3'
miRNA:   3'- -CGAuGGCaa-UGGCAGC--UugGCGG-CAG- -5'
13984 5' -53.7 NC_003521.1 + 149399 0.66 0.992072
Target:  5'- gGCUucgugGCCGUgGCCGUCacggacGAGCaguGCUGUCu -3'
miRNA:   3'- -CGA-----UGGCAaUGGCAG------CUUGg--CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 130105 0.66 0.992072
Target:  5'- aGCUGCCGggccucuucUGCCccugcgucGUCGGcggcGCCGCCGc- -3'
miRNA:   3'- -CGAUGGCa--------AUGG--------CAGCU----UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 194190 0.66 0.992072
Target:  5'- cGCcGCCGacGCCGUCu-ACCGCCu-- -3'
miRNA:   3'- -CGaUGGCaaUGGCAGcuUGGCGGcag -5'
13984 5' -53.7 NC_003521.1 + 115877 0.66 0.992072
Target:  5'- uGCUGCaCGUgcccACCcaCGGACUGCUGUa -3'
miRNA:   3'- -CGAUG-GCAa---UGGcaGCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 98040 0.66 0.992072
Target:  5'- --cGCCGUUgguggcACCGaCGAcGCCGCCG-Cg -3'
miRNA:   3'- cgaUGGCAA------UGGCaGCU-UGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 125816 0.66 0.991967
Target:  5'- uGCgugGCCGUaaacgucUGCgCGUCGGGCuCGCgGUg -3'
miRNA:   3'- -CGa--UGGCA-------AUG-GCAGCUUG-GCGgCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.