miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 3' -51.2 NC_003521.1 + 235036 0.66 0.998537
Target:  5'- -gAGGCCGUAcuCC-UCUCaUGAGGCCg -3'
miRNA:   3'- aaUCUGGCGUu-GGcAGAG-ACUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 47507 0.66 0.998537
Target:  5'- -cGGACCGCGaugcaGCCGUagCUGAGcagcguguCCCg -3'
miRNA:   3'- aaUCUGGCGU-----UGGCAgaGACUUu-------GGG- -5'
13985 3' -51.2 NC_003521.1 + 150267 0.66 0.998537
Target:  5'- ---cACCGCGGCCGgccUCUCgUGGGugCUg -3'
miRNA:   3'- aaucUGGCGUUGGC---AGAG-ACUUugGG- -5'
13985 3' -51.2 NC_003521.1 + 61778 0.66 0.998537
Target:  5'- -gGGACCGCcGCCGgCUCcggcgUGGAugCg -3'
miRNA:   3'- aaUCUGGCGuUGGCaGAG-----ACUUugGg -5'
13985 3' -51.2 NC_003521.1 + 187585 0.66 0.998248
Target:  5'- ---uGCUGCGACCGcUUUCUGcuGCCg -3'
miRNA:   3'- aaucUGGCGUUGGC-AGAGACuuUGGg -5'
13985 3' -51.2 NC_003521.1 + 183832 0.66 0.998248
Target:  5'- --uGACCGCGGCCaUCgagGAGAgCCu -3'
miRNA:   3'- aauCUGGCGUUGGcAGagaCUUUgGG- -5'
13985 3' -51.2 NC_003521.1 + 207872 0.66 0.998248
Target:  5'- --uGuCCGC-GCCGUUUCUGuuucucGCCCu -3'
miRNA:   3'- aauCuGGCGuUGGCAGAGACuu----UGGG- -5'
13985 3' -51.2 NC_003521.1 + 114106 0.66 0.998248
Target:  5'- --cGACCGC-GCCGcCUCgGAucuGCUCa -3'
miRNA:   3'- aauCUGGCGuUGGCaGAGaCUu--UGGG- -5'
13985 3' -51.2 NC_003521.1 + 136145 0.66 0.998248
Target:  5'- gUGGcgcGCCGCcACCacCUgCUGGAGCCCa -3'
miRNA:   3'- aAUC---UGGCGuUGGcaGA-GACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 138098 0.66 0.997913
Target:  5'- --cGACCaGCAcgucuucugcGCCGUCuUCUccGAGACCUg -3'
miRNA:   3'- aauCUGG-CGU----------UGGCAG-AGA--CUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 154659 0.66 0.997913
Target:  5'- cUGGugCGC-ACCGUCUUcGAGcagcgcuCCCu -3'
miRNA:   3'- aAUCugGCGuUGGCAGAGaCUUu------GGG- -5'
13985 3' -51.2 NC_003521.1 + 151364 0.66 0.997913
Target:  5'- -cGGACCGCGAUCcgcgGUUUUaGAAACgCCg -3'
miRNA:   3'- aaUCUGGCGUUGG----CAGAGaCUUUG-GG- -5'
13985 3' -51.2 NC_003521.1 + 137887 0.66 0.997524
Target:  5'- cUGGACCGCGA-CGcCUCg---GCCCu -3'
miRNA:   3'- aAUCUGGCGUUgGCaGAGacuuUGGG- -5'
13985 3' -51.2 NC_003521.1 + 195928 0.66 0.997524
Target:  5'- ---cGCCGCGcCCGUCU--GAGAUCCg -3'
miRNA:   3'- aaucUGGCGUuGGCAGAgaCUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 117478 0.66 0.997524
Target:  5'- -gAGGCCaCGGCCG-CggcgCUGggGCCg -3'
miRNA:   3'- aaUCUGGcGUUGGCaGa---GACuuUGGg -5'
13985 3' -51.2 NC_003521.1 + 109728 0.66 0.997524
Target:  5'- ---cGCCGCcccGCCGUC-C-GGAGCCCg -3'
miRNA:   3'- aaucUGGCGu--UGGCAGaGaCUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 174053 0.66 0.997078
Target:  5'- gUGGGCUGCGAUCGccucguccUCaUCUGAcuccucagcaauGGCCCg -3'
miRNA:   3'- aAUCUGGCGUUGGC--------AG-AGACU------------UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 221773 0.66 0.997078
Target:  5'- ---cGCCGCGccGCCGUC-CUcGAAGCuCCa -3'
miRNA:   3'- aaucUGGCGU--UGGCAGaGA-CUUUG-GG- -5'
13985 3' -51.2 NC_003521.1 + 116775 0.66 0.996932
Target:  5'- gUGGGCCGCcgccgcggcacgcuGGCCGUCUacgGccgcGACCCc -3'
miRNA:   3'- aAUCUGGCG--------------UUGGCAGAga-Cu---UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 156993 0.66 0.996882
Target:  5'- -gAGAUCGCGACgGUCUCcuccguacuuuauUGAGcaggaaaaaaaaacACCCc -3'
miRNA:   3'- aaUCUGGCGUUGgCAGAG-------------ACUU--------------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.