Results 1 - 20 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13989 | 5' | -59 | NC_003521.1 | + | 155383 | 0.66 | 0.883184 |
Target: 5'- cGCCGGcGCggacgacgaGGCCGgcgGGGGGCUgGGCa- -3' miRNA: 3'- -UGGCU-CGa--------CCGGU---UCCCCGAgUUGcg -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 138571 | 0.66 | 0.883184 |
Target: 5'- -aCGAGgaG-CaCGAGGGGCggGACGCg -3' miRNA: 3'- ugGCUCgaCcG-GUUCCCCGagUUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 221063 | 0.66 | 0.883184 |
Target: 5'- gACCGAGCggUGGCUgAAGuGGaaGCcCGACGCc -3' miRNA: 3'- -UGGCUCG--ACCGG-UUC-CC--CGaGUUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 30448 | 0.66 | 0.883184 |
Target: 5'- uCCaGGC-GGCCGAGGGuGCcgauGACGCg -3' miRNA: 3'- uGGcUCGaCCGGUUCCC-CGag--UUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 24425 | 0.66 | 0.883184 |
Target: 5'- aGCCagacGGCgcaggGGCCGGcGGGCUCGgaacagguccGCGCg -3' miRNA: 3'- -UGGc---UCGa----CCGGUUcCCCGAGU----------UGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 201224 | 0.66 | 0.883184 |
Target: 5'- cGCUGGGCcGGCCGuacGGCUUcuACGCg -3' miRNA: 3'- -UGGCUCGaCCGGUuccCCGAGu-UGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 193274 | 0.66 | 0.882515 |
Target: 5'- uGCgGAGCggGuGCCGGGacGGGCgucggagUCGGCGCg -3' miRNA: 3'- -UGgCUCGa-C-CGGUUC--CCCG-------AGUUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 198280 | 0.66 | 0.87914 |
Target: 5'- aGCCGGGCgucgcggaggaccGCUggGGGGCUCcGgGUu -3' miRNA: 3'- -UGGCUCGac-----------CGGuuCCCCGAGuUgCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 27380 | 0.66 | 0.876403 |
Target: 5'- aGCCGGGg-GGCCAGgccacGGGGauCUCGugGUu -3' miRNA: 3'- -UGGCUCgaCCGGUU-----CCCC--GAGUugCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 72634 | 0.66 | 0.876403 |
Target: 5'- cACCGuGCUGGC---GGGccagcaGCUCAucACGCa -3' miRNA: 3'- -UGGCuCGACCGguuCCC------CGAGU--UGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 191580 | 0.66 | 0.876403 |
Target: 5'- gGCCGAGCgcaGGauCCGAGaGGGUaaGAUGCc -3' miRNA: 3'- -UGGCUCGa--CC--GGUUC-CCCGagUUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 113270 | 0.66 | 0.876403 |
Target: 5'- cGCCGAGCaccUGGCCGAcGGcGuGCUgcCGcCGCa -3' miRNA: 3'- -UGGCUCG---ACCGGUU-CC-C-CGA--GUuGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 78457 | 0.66 | 0.876403 |
Target: 5'- cCCGAGCgaccGaagaCGGGGGGCU--GCGCg -3' miRNA: 3'- uGGCUCGac--Cg---GUUCCCCGAguUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 92165 | 0.66 | 0.876403 |
Target: 5'- cACCG-GCUcGCCcGGGGGUcggggCGAUGCc -3' miRNA: 3'- -UGGCuCGAcCGGuUCCCCGa----GUUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 136761 | 0.66 | 0.875023 |
Target: 5'- cGCuCGAgcuGCUGGCCuaccugcgcgacAGcGGGCUCAcggucACGCu -3' miRNA: 3'- -UG-GCU---CGACCGGu-----------UC-CCCGAGU-----UGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 205946 | 0.66 | 0.872238 |
Target: 5'- cGCUGGGCUGGCCcucgcAgugcuucuacgugguGGGcGGCUCucacuCGCc -3' miRNA: 3'- -UGGCUCGACCGG-----U---------------UCC-CCGAGuu---GCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 15306 | 0.66 | 0.869423 |
Target: 5'- gUCGAcGCgcgacgGcGCCGAGcGGGUgaUCAGCGCg -3' miRNA: 3'- uGGCU-CGa-----C-CGGUUC-CCCG--AGUUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 203002 | 0.66 | 0.869423 |
Target: 5'- uCCGGGCggcucgcccGCCAAGacGGGUUCGGCGg -3' miRNA: 3'- uGGCUCGac-------CGGUUC--CCCGAGUUGCg -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 154113 | 0.66 | 0.869423 |
Target: 5'- aACCGGcccaucucGC-GGCCGGGcaaGGGCggCAGCGCc -3' miRNA: 3'- -UGGCU--------CGaCCGGUUC---CCCGa-GUUGCG- -5' |
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13989 | 5' | -59 | NC_003521.1 | + | 39534 | 0.66 | 0.869423 |
Target: 5'- gGCgaGAGCUGGCgCAGgucGGuGGCccCGACGCc -3' miRNA: 3'- -UGg-CUCGACCG-GUU---CC-CCGa-GUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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