miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 5' -59 NC_003521.1 + 155383 0.66 0.883184
Target:  5'- cGCCGGcGCggacgacgaGGCCGgcgGGGGGCUgGGCa- -3'
miRNA:   3'- -UGGCU-CGa--------CCGGU---UCCCCGAgUUGcg -5'
13989 5' -59 NC_003521.1 + 138571 0.66 0.883184
Target:  5'- -aCGAGgaG-CaCGAGGGGCggGACGCg -3'
miRNA:   3'- ugGCUCgaCcG-GUUCCCCGagUUGCG- -5'
13989 5' -59 NC_003521.1 + 221063 0.66 0.883184
Target:  5'- gACCGAGCggUGGCUgAAGuGGaaGCcCGACGCc -3'
miRNA:   3'- -UGGCUCG--ACCGG-UUC-CC--CGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 30448 0.66 0.883184
Target:  5'- uCCaGGC-GGCCGAGGGuGCcgauGACGCg -3'
miRNA:   3'- uGGcUCGaCCGGUUCCC-CGag--UUGCG- -5'
13989 5' -59 NC_003521.1 + 24425 0.66 0.883184
Target:  5'- aGCCagacGGCgcaggGGCCGGcGGGCUCGgaacagguccGCGCg -3'
miRNA:   3'- -UGGc---UCGa----CCGGUUcCCCGAGU----------UGCG- -5'
13989 5' -59 NC_003521.1 + 201224 0.66 0.883184
Target:  5'- cGCUGGGCcGGCCGuacGGCUUcuACGCg -3'
miRNA:   3'- -UGGCUCGaCCGGUuccCCGAGu-UGCG- -5'
13989 5' -59 NC_003521.1 + 193274 0.66 0.882515
Target:  5'- uGCgGAGCggGuGCCGGGacGGGCgucggagUCGGCGCg -3'
miRNA:   3'- -UGgCUCGa-C-CGGUUC--CCCG-------AGUUGCG- -5'
13989 5' -59 NC_003521.1 + 198280 0.66 0.87914
Target:  5'- aGCCGGGCgucgcggaggaccGCUggGGGGCUCcGgGUu -3'
miRNA:   3'- -UGGCUCGac-----------CGGuuCCCCGAGuUgCG- -5'
13989 5' -59 NC_003521.1 + 27380 0.66 0.876403
Target:  5'- aGCCGGGg-GGCCAGgccacGGGGauCUCGugGUu -3'
miRNA:   3'- -UGGCUCgaCCGGUU-----CCCC--GAGUugCG- -5'
13989 5' -59 NC_003521.1 + 72634 0.66 0.876403
Target:  5'- cACCGuGCUGGC---GGGccagcaGCUCAucACGCa -3'
miRNA:   3'- -UGGCuCGACCGguuCCC------CGAGU--UGCG- -5'
13989 5' -59 NC_003521.1 + 191580 0.66 0.876403
Target:  5'- gGCCGAGCgcaGGauCCGAGaGGGUaaGAUGCc -3'
miRNA:   3'- -UGGCUCGa--CC--GGUUC-CCCGagUUGCG- -5'
13989 5' -59 NC_003521.1 + 113270 0.66 0.876403
Target:  5'- cGCCGAGCaccUGGCCGAcGGcGuGCUgcCGcCGCa -3'
miRNA:   3'- -UGGCUCG---ACCGGUU-CC-C-CGA--GUuGCG- -5'
13989 5' -59 NC_003521.1 + 78457 0.66 0.876403
Target:  5'- cCCGAGCgaccGaagaCGGGGGGCU--GCGCg -3'
miRNA:   3'- uGGCUCGac--Cg---GUUCCCCGAguUGCG- -5'
13989 5' -59 NC_003521.1 + 92165 0.66 0.876403
Target:  5'- cACCG-GCUcGCCcGGGGGUcggggCGAUGCc -3'
miRNA:   3'- -UGGCuCGAcCGGuUCCCCGa----GUUGCG- -5'
13989 5' -59 NC_003521.1 + 136761 0.66 0.875023
Target:  5'- cGCuCGAgcuGCUGGCCuaccugcgcgacAGcGGGCUCAcggucACGCu -3'
miRNA:   3'- -UG-GCU---CGACCGGu-----------UC-CCCGAGU-----UGCG- -5'
13989 5' -59 NC_003521.1 + 205946 0.66 0.872238
Target:  5'- cGCUGGGCUGGCCcucgcAgugcuucuacgugguGGGcGGCUCucacuCGCc -3'
miRNA:   3'- -UGGCUCGACCGG-----U---------------UCC-CCGAGuu---GCG- -5'
13989 5' -59 NC_003521.1 + 15306 0.66 0.869423
Target:  5'- gUCGAcGCgcgacgGcGCCGAGcGGGUgaUCAGCGCg -3'
miRNA:   3'- uGGCU-CGa-----C-CGGUUC-CCCG--AGUUGCG- -5'
13989 5' -59 NC_003521.1 + 203002 0.66 0.869423
Target:  5'- uCCGGGCggcucgcccGCCAAGacGGGUUCGGCGg -3'
miRNA:   3'- uGGCUCGac-------CGGUUC--CCCGAGUUGCg -5'
13989 5' -59 NC_003521.1 + 154113 0.66 0.869423
Target:  5'- aACCGGcccaucucGC-GGCCGGGcaaGGGCggCAGCGCc -3'
miRNA:   3'- -UGGCU--------CGaCCGGUUC---CCCGa-GUUGCG- -5'
13989 5' -59 NC_003521.1 + 39534 0.66 0.869423
Target:  5'- gGCgaGAGCUGGCgCAGgucGGuGGCccCGACGCc -3'
miRNA:   3'- -UGg-CUCGACCG-GUU---CC-CCGa-GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.