miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 3' -61.7 NC_003521.1 + 161145 0.66 0.763485
Target:  5'- -gGCCGcggGCGGuCGCGgacgucguucgcaaCAGUCGCCg -3'
miRNA:   3'- aaCGGCaa-CGCC-GCGCac------------GUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 68696 0.66 0.762586
Target:  5'- gUGCCGcgacgaacucaUgaccGUGGCGcCGU-CGGCCGCCc -3'
miRNA:   3'- aACGGC-----------Aa---CGCCGC-GCAcGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 141461 0.66 0.762586
Target:  5'- gUGCUGcagGUGGUGCGa--AGCCGCUu -3'
miRNA:   3'- aACGGCaa-CGCCGCGCacgUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 116763 0.66 0.762586
Target:  5'- -gGCUugUGCaGCGUGgGCcGCCGCCg -3'
miRNA:   3'- aaCGGcaACGcCGCGCaCGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 121406 0.66 0.762586
Target:  5'- -aGCCGUUGCgcuGGUGCuUGCgcaugaagGGCUGCg -3'
miRNA:   3'- aaCGGCAACG---CCGCGcACG--------UCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 15224 0.66 0.762586
Target:  5'- -gGCUGcagGCGGCcgaGCGcGaGGCCGCCg -3'
miRNA:   3'- aaCGGCaa-CGCCG---CGCaCgUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 116359 0.66 0.762586
Target:  5'- -cGCgagCGcgGCGGCgaacGCGUGCcGCCGCg -3'
miRNA:   3'- aaCG---GCaaCGCCG----CGCACGuCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 223480 0.66 0.762586
Target:  5'- -gGCCGUUgGCcaccaGCGCGuUGC-GCCGUCu -3'
miRNA:   3'- aaCGGCAA-CGc----CGCGC-ACGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 165039 0.66 0.761687
Target:  5'- gUGCUGccGCGGCGUcUGCaccuggaGGCgGCCu -3'
miRNA:   3'- aACGGCaaCGCCGCGcACG-------UCGgCGG- -5'
13991 3' -61.7 NC_003521.1 + 102990 0.66 0.761687
Target:  5'- -gGCCcagccGCGGCGUGagcgccuuaauaaUGCAGCUGCg -3'
miRNA:   3'- aaCGGcaa--CGCCGCGC-------------ACGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 74131 0.66 0.760786
Target:  5'- -cGCCGUgcaggacgacGUGGCGCGccacggggcccaGguGCCGCUg -3'
miRNA:   3'- aaCGGCAa---------CGCCGCGCa-----------CguCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 150537 0.66 0.757173
Target:  5'- -aGCCGUgggguccggcggugGUGGUGCGgguggugGCGGCgGCg -3'
miRNA:   3'- aaCGGCAa-------------CGCCGCGCa------CGUCGgCGg -5'
13991 3' -61.7 NC_003521.1 + 30228 0.66 0.753545
Target:  5'- aUUGCUGcUGaCGG-GCGUGgauacCGGCCGCUa -3'
miRNA:   3'- -AACGGCaAC-GCCgCGCAC-----GUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 68034 0.66 0.753545
Target:  5'- -cGCCacggGCGGCGUGguccGCGG-CGCCc -3'
miRNA:   3'- aaCGGcaa-CGCCGCGCa---CGUCgGCGG- -5'
13991 3' -61.7 NC_003521.1 + 123907 0.66 0.753545
Target:  5'- cUGUCGgcgcGCGGCGCuGUucuccaccaguuGCAGCggCGCCg -3'
miRNA:   3'- aACGGCaa--CGCCGCG-CA------------CGUCG--GCGG- -5'
13991 3' -61.7 NC_003521.1 + 168157 0.66 0.753545
Target:  5'- -gGCC--UGCGGCGUaUGCGGCauaGUCu -3'
miRNA:   3'- aaCGGcaACGCCGCGcACGUCGg--CGG- -5'
13991 3' -61.7 NC_003521.1 + 163746 0.66 0.753545
Target:  5'- -cGCCGgcggcaacaGCGGCGCucacgGCGGCgGCa -3'
miRNA:   3'- aaCGGCaa-------CGCCGCGca---CGUCGgCGg -5'
13991 3' -61.7 NC_003521.1 + 37419 0.66 0.753545
Target:  5'- cUGaCCG-UGUGGCGCG-GC-GCCgaGCCu -3'
miRNA:   3'- aAC-GGCaACGCCGCGCaCGuCGG--CGG- -5'
13991 3' -61.7 NC_003521.1 + 122049 0.66 0.753545
Target:  5'- -aGCgaGaUGCagGGCGaCGUGCgcacGGCCGCCg -3'
miRNA:   3'- aaCGg-CaACG--CCGC-GCACG----UCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 40718 0.66 0.753545
Target:  5'- gUGCUGgcgcGCGGCuGUGacUGCAGCUGUg -3'
miRNA:   3'- aACGGCaa--CGCCG-CGC--ACGUCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.