Results 1 - 20 of 331 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13991 | 3' | -61.7 | NC_003521.1 | + | 161145 | 0.66 | 0.763485 |
Target: 5'- -gGCCGcggGCGGuCGCGgacgucguucgcaaCAGUCGCCg -3' miRNA: 3'- aaCGGCaa-CGCC-GCGCac------------GUCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 68696 | 0.66 | 0.762586 |
Target: 5'- gUGCCGcgacgaacucaUgaccGUGGCGcCGU-CGGCCGCCc -3' miRNA: 3'- aACGGC-----------Aa---CGCCGC-GCAcGUCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 141461 | 0.66 | 0.762586 |
Target: 5'- gUGCUGcagGUGGUGCGa--AGCCGCUu -3' miRNA: 3'- aACGGCaa-CGCCGCGCacgUCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 116763 | 0.66 | 0.762586 |
Target: 5'- -gGCUugUGCaGCGUGgGCcGCCGCCg -3' miRNA: 3'- aaCGGcaACGcCGCGCaCGuCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 121406 | 0.66 | 0.762586 |
Target: 5'- -aGCCGUUGCgcuGGUGCuUGCgcaugaagGGCUGCg -3' miRNA: 3'- aaCGGCAACG---CCGCGcACG--------UCGGCGg -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 15224 | 0.66 | 0.762586 |
Target: 5'- -gGCUGcagGCGGCcgaGCGcGaGGCCGCCg -3' miRNA: 3'- aaCGGCaa-CGCCG---CGCaCgUCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 116359 | 0.66 | 0.762586 |
Target: 5'- -cGCgagCGcgGCGGCgaacGCGUGCcGCCGCg -3' miRNA: 3'- aaCG---GCaaCGCCG----CGCACGuCGGCGg -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 223480 | 0.66 | 0.762586 |
Target: 5'- -gGCCGUUgGCcaccaGCGCGuUGC-GCCGUCu -3' miRNA: 3'- aaCGGCAA-CGc----CGCGC-ACGuCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 165039 | 0.66 | 0.761687 |
Target: 5'- gUGCUGccGCGGCGUcUGCaccuggaGGCgGCCu -3' miRNA: 3'- aACGGCaaCGCCGCGcACG-------UCGgCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 102990 | 0.66 | 0.761687 |
Target: 5'- -gGCCcagccGCGGCGUGagcgccuuaauaaUGCAGCUGCg -3' miRNA: 3'- aaCGGcaa--CGCCGCGC-------------ACGUCGGCGg -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 74131 | 0.66 | 0.760786 |
Target: 5'- -cGCCGUgcaggacgacGUGGCGCGccacggggcccaGguGCCGCUg -3' miRNA: 3'- aaCGGCAa---------CGCCGCGCa-----------CguCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 150537 | 0.66 | 0.757173 |
Target: 5'- -aGCCGUgggguccggcggugGUGGUGCGgguggugGCGGCgGCg -3' miRNA: 3'- aaCGGCAa-------------CGCCGCGCa------CGUCGgCGg -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 30228 | 0.66 | 0.753545 |
Target: 5'- aUUGCUGcUGaCGG-GCGUGgauacCGGCCGCUa -3' miRNA: 3'- -AACGGCaAC-GCCgCGCAC-----GUCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 68034 | 0.66 | 0.753545 |
Target: 5'- -cGCCacggGCGGCGUGguccGCGG-CGCCc -3' miRNA: 3'- aaCGGcaa-CGCCGCGCa---CGUCgGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 123907 | 0.66 | 0.753545 |
Target: 5'- cUGUCGgcgcGCGGCGCuGUucuccaccaguuGCAGCggCGCCg -3' miRNA: 3'- aACGGCaa--CGCCGCG-CA------------CGUCG--GCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 168157 | 0.66 | 0.753545 |
Target: 5'- -gGCC--UGCGGCGUaUGCGGCauaGUCu -3' miRNA: 3'- aaCGGcaACGCCGCGcACGUCGg--CGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 163746 | 0.66 | 0.753545 |
Target: 5'- -cGCCGgcggcaacaGCGGCGCucacgGCGGCgGCa -3' miRNA: 3'- aaCGGCaa-------CGCCGCGca---CGUCGgCGg -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 37419 | 0.66 | 0.753545 |
Target: 5'- cUGaCCG-UGUGGCGCG-GC-GCCgaGCCu -3' miRNA: 3'- aAC-GGCaACGCCGCGCaCGuCGG--CGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 122049 | 0.66 | 0.753545 |
Target: 5'- -aGCgaGaUGCagGGCGaCGUGCgcacGGCCGCCg -3' miRNA: 3'- aaCGg-CaACG--CCGC-GCACG----UCGGCGG- -5' |
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13991 | 3' | -61.7 | NC_003521.1 | + | 40718 | 0.66 | 0.753545 |
Target: 5'- gUGCUGgcgcGCGGCuGUGacUGCAGCUGUg -3' miRNA: 3'- aACGGCaa--CGCCG-CGC--ACGUCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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