miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 88635 0.66 0.92211
Target:  5'- cCGGCUGUGGGUgcagacgguccaGUCGCcGaUGCUGAgCa -3'
miRNA:   3'- cGUCGACGUCCA------------CAGCG-C-GCGACUgG- -5'
13993 5' -58 NC_003521.1 + 228378 0.66 0.92211
Target:  5'- uGCAGC-GuCAGGUGUUGC-CGC-GAgCa -3'
miRNA:   3'- -CGUCGaC-GUCCACAGCGcGCGaCUgG- -5'
13993 5' -58 NC_003521.1 + 220975 0.66 0.92211
Target:  5'- aGC-GCUGCAGcuccacGUCGCGgGCgaacguguaggUGGCCa -3'
miRNA:   3'- -CGuCGACGUCca----CAGCGCgCG-----------ACUGG- -5'
13993 5' -58 NC_003521.1 + 124195 0.66 0.92211
Target:  5'- cCGGCUGgGGGUGagCGgGCccuuuCUGGCCc -3'
miRNA:   3'- cGUCGACgUCCACa-GCgCGc----GACUGG- -5'
13993 5' -58 NC_003521.1 + 110715 0.66 0.92211
Target:  5'- cGCGGUacgacgGCAGGUccCGgGUGgaGACCa -3'
miRNA:   3'- -CGUCGa-----CGUCCAcaGCgCGCgaCUGG- -5'
13993 5' -58 NC_003521.1 + 124037 0.66 0.92211
Target:  5'- aGCGGCUGCuuGGcGUUGUGC-UUGuCCg -3'
miRNA:   3'- -CGUCGACGu-CCaCAGCGCGcGACuGG- -5'
13993 5' -58 NC_003521.1 + 102778 0.66 0.92211
Target:  5'- aGCGGCUGCGcGaUGaCGCGCcgGC-GGCCg -3'
miRNA:   3'- -CGUCGACGUcC-ACaGCGCG--CGaCUGG- -5'
13993 5' -58 NC_003521.1 + 225489 0.66 0.92211
Target:  5'- cGCGacuGCUGCAcca---GCGCGCUGAUCa -3'
miRNA:   3'- -CGU---CGACGUccacagCGCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 20746 0.66 0.92211
Target:  5'- uCAGCUGC--GUGUaCGCGCuGCUGguGCUg -3'
miRNA:   3'- cGUCGACGucCACA-GCGCG-CGAC--UGG- -5'
13993 5' -58 NC_003521.1 + 97278 0.66 0.92211
Target:  5'- gGCGGCUGCugcucgucgccGGcGgcgCGCGUGCgGAUCa -3'
miRNA:   3'- -CGUCGACGu----------CCaCa--GCGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 130455 0.66 0.916695
Target:  5'- aCGGCcgaGUuuuucgGUCGCGUGCUGGCCc -3'
miRNA:   3'- cGUCGa--CGucca--CAGCGCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 187615 0.66 0.916695
Target:  5'- aCGGcCUGCcGGgcgagccgGgccgCGCGcCGCUGGCCa -3'
miRNA:   3'- cGUC-GACGuCCa-------Ca---GCGC-GCGACUGG- -5'
13993 5' -58 NC_003521.1 + 31085 0.66 0.916695
Target:  5'- cCGGCUGCcguGGcUGcCGCuGCGCacGACCu -3'
miRNA:   3'- cGUCGACGu--CC-ACaGCG-CGCGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 28481 0.66 0.916695
Target:  5'- cCAGCgGguGGUGaUGgGCG-UGACCg -3'
miRNA:   3'- cGUCGaCguCCACaGCgCGCgACUGG- -5'
13993 5' -58 NC_003521.1 + 53398 0.66 0.916695
Target:  5'- cGCGGCgaGCAGGggaUgGCGCGUcGGCa -3'
miRNA:   3'- -CGUCGa-CGUCCac-AgCGCGCGaCUGg -5'
13993 5' -58 NC_003521.1 + 72276 0.66 0.916695
Target:  5'- cGCAGCccGcCAGcGccGcCGcCGCGCUGGCCg -3'
miRNA:   3'- -CGUCGa-C-GUC-Ca-CaGC-GCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 226152 0.66 0.916695
Target:  5'- aGCGGCgGCAcucGGcGUCGUucaGCGCgcagaagGGCCa -3'
miRNA:   3'- -CGUCGaCGU---CCaCAGCG---CGCGa------CUGG- -5'
13993 5' -58 NC_003521.1 + 196989 0.66 0.916695
Target:  5'- cCAcCUGCAGGUGUCGCcaGUGaa-GCCg -3'
miRNA:   3'- cGUcGACGUCCACAGCG--CGCgacUGG- -5'
13993 5' -58 NC_003521.1 + 35144 0.66 0.916695
Target:  5'- -gAGC-GCGGGUG-CGCcacGCGCccgGGCCu -3'
miRNA:   3'- cgUCGaCGUCCACaGCG---CGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 42999 0.66 0.916695
Target:  5'- uGCAGacgGCc-GUGUCGCGCGuCUGcACg -3'
miRNA:   3'- -CGUCga-CGucCACAGCGCGC-GAC-UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.