miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 87351 0.66 0.982642
Target:  5'- cCCGa--GCCGGaGCCCgAGGAggAGGCCg -3'
miRNA:   3'- -GGCacaCGGUCgUGGGgUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 117037 0.66 0.982642
Target:  5'- aCGUcaagGCCAGUguuuCgCCCGAGgcGGCCg -3'
miRNA:   3'- gGCAca--CGGUCGu---G-GGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 135909 0.66 0.982642
Target:  5'- cCCGUcuuuGUGCCGGCcucggccacgGCCgCGGGAuGugCg -3'
miRNA:   3'- -GGCA----CACGGUCG----------UGGgGUUCUuCugG- -5'
13995 5' -54.9 NC_003521.1 + 207254 0.66 0.982642
Target:  5'- uCCGUGccGUuaCGGCACUCCGAGAcu-CCg -3'
miRNA:   3'- -GGCACa-CG--GUCGUGGGGUUCUucuGG- -5'
13995 5' -54.9 NC_003521.1 + 183246 0.66 0.982642
Target:  5'- uUCGcc-GCCGGCGCCCUc-GAAGGCg -3'
miRNA:   3'- -GGCacaCGGUCGUGGGGuuCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 72635 0.66 0.982642
Target:  5'- aCCGUGcuggcggGCCAGCAgCUCAucacGcAGACUa -3'
miRNA:   3'- -GGCACa------CGGUCGUgGGGUu---CuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 75013 0.66 0.982642
Target:  5'- aUCGUGgGCCAGgACCCCuacugcGAcGGCa -3'
miRNA:   3'- -GGCACaCGGUCgUGGGGuu----CUuCUGg -5'
13995 5' -54.9 NC_003521.1 + 169595 0.66 0.982642
Target:  5'- uCUGUGcUGUCAGUGCCgCGguuguAGggGACg -3'
miRNA:   3'- -GGCAC-ACGGUCGUGGgGU-----UCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 111031 0.66 0.982642
Target:  5'- aCGgcu-UCAGCGCCCCAGGc-GACCc -3'
miRNA:   3'- gGCacacGGUCGUGGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 220041 0.66 0.982642
Target:  5'- cUCGUG-GCCcgacAGCGCCaacgCCAGGAAGgacagcACCa -3'
miRNA:   3'- -GGCACaCGG----UCGUGG----GGUUCUUC------UGG- -5'
13995 5' -54.9 NC_003521.1 + 157289 0.66 0.981869
Target:  5'- cCCGUGUGCCucgauuuccuCUCCAAGAuGAUg -3'
miRNA:   3'- -GGCACACGGucgu------GGGGUUCUuCUGg -5'
13995 5' -54.9 NC_003521.1 + 215122 0.66 0.980662
Target:  5'- gCGUGU-UCGGUACCagccaCGAGggGGCUu -3'
miRNA:   3'- gGCACAcGGUCGUGGg----GUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 233505 0.66 0.980662
Target:  5'- cCCGagccUGUGCCuuCugCUCcuGAGGACCc -3'
miRNA:   3'- -GGC----ACACGGucGugGGGuuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 44276 0.66 0.980662
Target:  5'- gCUGUGgGUCGGCuuucucCCCCGGGAgcuGGGCg -3'
miRNA:   3'- -GGCACaCGGUCGu-----GGGGUUCU---UCUGg -5'
13995 5' -54.9 NC_003521.1 + 14060 0.66 0.980662
Target:  5'- --aUGUGCCuGgAUCCCcuGGAGAUCa -3'
miRNA:   3'- ggcACACGGuCgUGGGGuuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 194391 0.66 0.980662
Target:  5'- cCCGcagccccGCCGGaUACCCUcgcacGAGGAGGCCg -3'
miRNA:   3'- -GGCaca----CGGUC-GUGGGG-----UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 59557 0.66 0.980455
Target:  5'- cCCGcGU-CCGGCGCCgcggggguuucguCCGAGAAGcgcGCCa -3'
miRNA:   3'- -GGCaCAcGGUCGUGG-------------GGUUCUUC---UGG- -5'
13995 5' -54.9 NC_003521.1 + 92682 0.66 0.979396
Target:  5'- cUCGgcgagGUGCCGGguCCCUggGAcacgaugaggucccaGGAUCc -3'
miRNA:   3'- -GGCa----CACGGUCguGGGGuuCU---------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 31770 0.66 0.978518
Target:  5'- aUCGggGUcgcGCCAGuCGCCgCAcucgcAGAAGGCCg -3'
miRNA:   3'- -GGCa-CA---CGGUC-GUGGgGU-----UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 68062 0.66 0.978518
Target:  5'- cCCG-GUGgCAGCcagaaugccggGCCCCGcaagaAGAAGAgCa -3'
miRNA:   3'- -GGCaCACgGUCG-----------UGGGGU-----UCUUCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.