Results 1 - 20 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13995 | 5' | -54.9 | NC_003521.1 | + | 421 | 0.67 | 0.971034 |
Target: 5'- gCUGUGUGCUGGCGaggCCAAGccGGCg -3' miRNA: 3'- -GGCACACGGUCGUgg-GGUUCuuCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 504 | 0.68 | 0.932533 |
Target: 5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3' miRNA: 3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 681 | 0.67 | 0.958372 |
Target: 5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3' miRNA: 3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 765 | 0.66 | 0.973711 |
Target: 5'- gCCGgagGCCaagcaGGCGCCaUCGgcGGAGGACCg -3' miRNA: 3'- -GGCacaCGG-----UCGUGG-GGU--UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 2250 | 0.7 | 0.893297 |
Target: 5'- gCUGgGUGCCGucuucggcuacuGC-CCCCAGGAcGGCCa -3' miRNA: 3'- -GGCaCACGGU------------CGuGGGGUUCUuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 3400 | 0.73 | 0.766028 |
Target: 5'- cCCGac-GCCGGCAUCCgGGGAugGGGCCa -3' miRNA: 3'- -GGCacaCGGUCGUGGGgUUCU--UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 4225 | 0.66 | 0.976204 |
Target: 5'- -----aGCCGGC-CCCgGgaGGAGGACCg -3' miRNA: 3'- ggcacaCGGUCGuGGGgU--UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 6048 | 0.66 | 0.978518 |
Target: 5'- gCCGUGccCCAGCgGCCCCGcaGGGcguGAUCa -3' miRNA: 3'- -GGCACacGGUCG-UGGGGU--UCUu--CUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 7199 | 0.69 | 0.922792 |
Target: 5'- gCCGcUGaaauUGCCcucgAGCACCCCGccGGAGAUCa -3' miRNA: 3'- -GGC-AC----ACGG----UCGUGGGGUu-CUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 11834 | 0.67 | 0.956189 |
Target: 5'- uCCGUGcUGCCGGUccugcgccGCCCgCGcaccuccucggacgaGGAGGACUc -3' miRNA: 3'- -GGCAC-ACGGUCG--------UGGG-GU---------------UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 11943 | 0.69 | 0.922792 |
Target: 5'- gCCGUGUuuuGUguGUAUCCCAAGucaGAGAgCCg -3' miRNA: 3'- -GGCACA---CGguCGUGGGGUUC---UUCU-GG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 13941 | 0.68 | 0.942354 |
Target: 5'- gCCGUGgUGCCcccgcAGCugCCCucgcuGGAgcccugauGGGCCu -3' miRNA: 3'- -GGCAC-ACGG-----UCGugGGGu----UCU--------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 14060 | 0.66 | 0.980662 |
Target: 5'- --aUGUGCCuGgAUCCCcuGGAGAUCa -3' miRNA: 3'- ggcACACGGuCgUGGGGuuCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 14967 | 0.71 | 0.835177 |
Target: 5'- aCCGcaccUGUGCCcGCACCaCCAcGAgcgcgccguGGACCa -3' miRNA: 3'- -GGC----ACACGGuCGUGG-GGUuCU---------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 17358 | 0.72 | 0.78415 |
Target: 5'- gCCGUGacGCCGGCGCggcggcccagaCUCGAGAgGGACCg -3' miRNA: 3'- -GGCACa-CGGUCGUG-----------GGGUUCU-UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 20289 | 0.68 | 0.946686 |
Target: 5'- gCgGUGgaucucGCCGGCGCCaugcagcaCCAGGAGG-CCa -3' miRNA: 3'- -GgCACa-----CGGUCGUGG--------GGUUCUUCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 21551 | 0.68 | 0.942354 |
Target: 5'- cCCGcucaUGUGCCAGC-CCCU--GcGGGCCc -3' miRNA: 3'- -GGC----ACACGGUCGuGGGGuuCuUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 23002 | 0.66 | 0.978518 |
Target: 5'- aCG-GUGauagCGGCA-UCCGAGGAGGCCa -3' miRNA: 3'- gGCaCACg---GUCGUgGGGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 24615 | 0.67 | 0.954692 |
Target: 5'- gCGUGUGCCAGgaggACCCCGcgccGGugCu -3' miRNA: 3'- gGCACACGGUCg---UGGGGUucu-UCugG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 25383 | 0.67 | 0.954692 |
Target: 5'- cCUG-GcGCCAGCACCCgCGgcucugcuucacGGAGGGCUc -3' miRNA: 3'- -GGCaCaCGGUCGUGGG-GU------------UCUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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