miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13999 5' -62 NC_003521.1 + 216551 0.65 0.820696
Target:  5'- uGGACcugCCGAgggaauccaggUCGCCGCCGauauaccgcccgaccGCCCGCu -3'
miRNA:   3'- -CCUGa--GGCU-----------GGCGGUGGCac-------------CGGGCG- -5'
13999 5' -62 NC_003521.1 + 207837 0.66 0.818329
Target:  5'- gGGGCUUCauCCGCCAgggcuccuucugguuCCGUuGUCCGCg -3'
miRNA:   3'- -CCUGAGGcuGGCGGU---------------GGCAcCGGGCG- -5'
13999 5' -62 NC_003521.1 + 37698 0.66 0.815152
Target:  5'- cGGCUCCGGCuCGCagaguGCCuuUGGCCagGCg -3'
miRNA:   3'- cCUGAGGCUG-GCGg----UGGc-ACCGGg-CG- -5'
13999 5' -62 NC_003521.1 + 108376 0.66 0.815152
Target:  5'- cGGACgcgCCGAacagcccaccaCCGCUACCaGcGGCgucgCCGCa -3'
miRNA:   3'- -CCUGa--GGCU-----------GGCGGUGG-CaCCG----GGCG- -5'
13999 5' -62 NC_003521.1 + 13743 0.66 0.815152
Target:  5'- uGGCUCgGACCGUCAuCUGUcucgacugcGGUCCGa -3'
miRNA:   3'- cCUGAGgCUGGCGGU-GGCA---------CCGGGCg -5'
13999 5' -62 NC_003521.1 + 92354 0.66 0.815152
Target:  5'- cGGAaccCUCCGucCUGCCcguCCGcucGCCCGCu -3'
miRNA:   3'- -CCU---GAGGCu-GGCGGu--GGCac-CGGGCG- -5'
13999 5' -62 NC_003521.1 + 229218 0.66 0.815152
Target:  5'- aGAUUgCGAuacCCGCCA--GUGGaCCCGCg -3'
miRNA:   3'- cCUGAgGCU---GGCGGUggCACC-GGGCG- -5'
13999 5' -62 NC_003521.1 + 23487 0.66 0.815152
Target:  5'- aGGACcggccgCCGuCCGCCACCGUG-CUg-- -3'
miRNA:   3'- -CCUGa-----GGCuGGCGGUGGCACcGGgcg -5'
13999 5' -62 NC_003521.1 + 153176 0.66 0.815152
Target:  5'- uGGGCUgCGccuCCaGCCugUGcgaGGCCUGCg -3'
miRNA:   3'- -CCUGAgGCu--GG-CGGugGCa--CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 123930 0.66 0.815152
Target:  5'- gGGuCUcccgCCGGCgCGCCGCCGcaGCCgCGCc -3'
miRNA:   3'- -CCuGA----GGCUG-GCGGUGGCacCGG-GCG- -5'
13999 5' -62 NC_003521.1 + 66596 0.66 0.815152
Target:  5'- -aGCUCCGACgCGCCcCUGcccGaCCCGCg -3'
miRNA:   3'- ccUGAGGCUG-GCGGuGGCac-C-GGGCG- -5'
13999 5' -62 NC_003521.1 + 165697 0.66 0.815152
Target:  5'- cGGCcgCCGaaaGCCGuCCACCGUgcgGGCCaccuCGCg -3'
miRNA:   3'- cCUGa-GGC---UGGC-GGUGGCA---CCGG----GCG- -5'
13999 5' -62 NC_003521.1 + 234083 0.66 0.815152
Target:  5'- gGGACUCggCGAgCGCuggCugCGUcaGGCCCuGCa -3'
miRNA:   3'- -CCUGAG--GCUgGCG---GugGCA--CCGGG-CG- -5'
13999 5' -62 NC_003521.1 + 174054 0.66 0.815152
Target:  5'- uGGGCUgCGAUCGCCucguccucauCUGacuccucagcaaUGGCCCGg -3'
miRNA:   3'- -CCUGAgGCUGGCGGu---------GGC------------ACCGGGCg -5'
13999 5' -62 NC_003521.1 + 154636 0.66 0.814354
Target:  5'- cGGCUUCGucagcaagcacguGCCGCUgGCCGaGGCCgGCa -3'
miRNA:   3'- cCUGAGGC-------------UGGCGG-UGGCaCCGGgCG- -5'
13999 5' -62 NC_003521.1 + 139426 0.66 0.814354
Target:  5'- cGGGCUCUccugcguGGCCGUCAagCGgcgcgacGGCUCGCg -3'
miRNA:   3'- -CCUGAGG-------CUGGCGGUg-GCa------CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 35592 0.66 0.814354
Target:  5'- uGGGCUUCGAuggguccccugauCCGCCugCc-GGCCCu- -3'
miRNA:   3'- -CCUGAGGCU-------------GGCGGugGcaCCGGGcg -5'
13999 5' -62 NC_003521.1 + 68734 0.66 0.812754
Target:  5'- -uACgagUCGGCCGCCaaggcuuacGCCGUGgggcaguucgaggaGCCCGCc -3'
miRNA:   3'- ccUGa--GGCUGGCGG---------UGGCAC--------------CGGGCG- -5'
13999 5' -62 NC_003521.1 + 183663 0.66 0.807113
Target:  5'- cGGcACgccgaCGACCuGCCGCgCGUGGCCgacgagaccuauCGCu -3'
miRNA:   3'- -CC-UGag---GCUGG-CGGUG-GCACCGG------------GCG- -5'
13999 5' -62 NC_003521.1 + 162670 0.66 0.807113
Target:  5'- aGGAUgugccucguUCgCGGCCGCCGCCGcuaacGcGCCCa- -3'
miRNA:   3'- -CCUG---------AG-GCUGGCGGUGGCa----C-CGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.