miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14000 5' -53.5 NC_003521.1 + 201668 0.66 0.992094
Target:  5'- -gGGCCGCGAgcugcgccgcCGGUgGCAGCAcacgggcaUCCCg -3'
miRNA:   3'- cgUCGGCGCU----------GUUAgCGUUGUc-------AGGG- -5'
14000 5' -53.5 NC_003521.1 + 113182 0.66 0.992094
Target:  5'- -gGGCCGCGAgGugcccGUCuucgugcacgaGCAGCAGUaCCUg -3'
miRNA:   3'- cgUCGGCGCUgU-----UAG-----------CGUUGUCA-GGG- -5'
14000 5' -53.5 NC_003521.1 + 50646 0.66 0.992094
Target:  5'- cGUAuGUCGUGACuGUCGCG-CGuGUCCUu -3'
miRNA:   3'- -CGU-CGGCGCUGuUAGCGUuGU-CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 238795 0.66 0.992094
Target:  5'- gGUAGCaGCgGACGAguuguggggCGCGACGccguGUCCCu -3'
miRNA:   3'- -CGUCGgCG-CUGUUa--------GCGUUGU----CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 213593 0.66 0.992094
Target:  5'- aGCAGCCgGCGAUGAcCaggcuguugggGUGGCGGUCgCCg -3'
miRNA:   3'- -CGUCGG-CGCUGUUaG-----------CGUUGUCAG-GG- -5'
14000 5' -53.5 NC_003521.1 + 166127 0.66 0.992094
Target:  5'- cGCuGCCGCGGCGccgccGUCGCugcugcuuGCGGUa-- -3'
miRNA:   3'- -CGuCGGCGCUGU-----UAGCGu-------UGUCAggg -5'
14000 5' -53.5 NC_003521.1 + 198035 0.66 0.992094
Target:  5'- uGCAGCCGCcgggcugcacgGGCAGgugcuugaGCAGCAGcuuuuucuugCCCu -3'
miRNA:   3'- -CGUCGGCG-----------CUGUUag------CGUUGUCa---------GGG- -5'
14000 5' -53.5 NC_003521.1 + 215046 0.66 0.992094
Target:  5'- uGCAGCCGCGugGAgccccuggGCuGCcugguGGUgCCCg -3'
miRNA:   3'- -CGUCGGCGCugUUag------CGuUG-----UCA-GGG- -5'
14000 5' -53.5 NC_003521.1 + 69795 0.66 0.992094
Target:  5'- aGCGGCCGUcgagauGACGcUCGCAcuugaggcgacACAGgcaCCa -3'
miRNA:   3'- -CGUCGGCG------CUGUuAGCGU-----------UGUCag-GG- -5'
14000 5' -53.5 NC_003521.1 + 74805 0.66 0.992094
Target:  5'- aGCGGCgagaCGCGGacggacggcgcCGAgCGCGACGgcGUCCCg -3'
miRNA:   3'- -CGUCG----GCGCU-----------GUUaGCGUUGU--CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 186625 0.66 0.992094
Target:  5'- cGCGGCgGCGGUggUgGCGGCAaGUCg- -3'
miRNA:   3'- -CGUCGgCGCUGuuAgCGUUGU-CAGgg -5'
14000 5' -53.5 NC_003521.1 + 222545 0.66 0.992094
Target:  5'- uGCGG-UGCGGCccucccGUCGCGGgcaGGUCCCc -3'
miRNA:   3'- -CGUCgGCGCUGu-----UAGCGUUg--UCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 38568 0.66 0.992094
Target:  5'- gGUAGCaGCgGACGAguuguggggCGCGACGccguGUCCCu -3'
miRNA:   3'- -CGUCGgCG-CUGUUa--------GCGUUGU----CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 72853 0.66 0.992094
Target:  5'- -gGGCgGCGACGGUagGCAcgGCGGUCg- -3'
miRNA:   3'- cgUCGgCGCUGUUAg-CGU--UGUCAGgg -5'
14000 5' -53.5 NC_003521.1 + 177667 0.66 0.992094
Target:  5'- gGCGG-CGCGuCGAUCGU--CAG-CCCg -3'
miRNA:   3'- -CGUCgGCGCuGUUAGCGuuGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 136181 0.66 0.992094
Target:  5'- gGCGGCgGCGuCGAgcaugaaggCGCucuucucGCAGUCCa -3'
miRNA:   3'- -CGUCGgCGCuGUUa--------GCGu------UGUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 8067 0.66 0.992094
Target:  5'- cGCAGaCCGUagaaauacacucGAUaggGAUCGCAGCGG-CUCg -3'
miRNA:   3'- -CGUC-GGCG------------CUG---UUAGCGUUGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 89733 0.66 0.992094
Target:  5'- aGCGGCC-CGACccgaggGGUCG--GCGGUCCa -3'
miRNA:   3'- -CGUCGGcGCUG------UUAGCguUGUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 49672 0.66 0.992094
Target:  5'- aGgGGCCG-GGCGAgCGCGGCGcuGUCgCCg -3'
miRNA:   3'- -CgUCGGCgCUGUUaGCGUUGU--CAG-GG- -5'
14000 5' -53.5 NC_003521.1 + 1441 0.66 0.992094
Target:  5'- -gGGCCGCGAgcugcgccgcCGGUgGCAGCAcacgggcaUCCCg -3'
miRNA:   3'- cgUCGGCGCU----------GUUAgCGUUGUc-------AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.