miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14003 3' -56.3 NC_003521.1 + 123898 0.66 0.965857
Target:  5'- uGUCGCgugcuguCGGCGCGCGGCgcugUUcuccaccaguugcagCGGCgCCg -3'
miRNA:   3'- -CAGUG-------GCUGUGCGCCGa---AA---------------GCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 223757 0.66 0.964922
Target:  5'- gGUCGCCGcCA-GCGGUaucgUCGGCgCUg -3'
miRNA:   3'- -CAGUGGCuGUgCGCCGaa--AGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 166653 0.66 0.964922
Target:  5'- -gCGCCGcgGCGCaGCGGCcagCGGCaCCu -3'
miRNA:   3'- caGUGGC--UGUG-CGCCGaaaGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 177561 0.66 0.964922
Target:  5'- gGUCGCCGAggaaggacucguCAaaggugGCGGCgccgcCGGUUCCg -3'
miRNA:   3'- -CAGUGGCU------------GUg-----CGCCGaaa--GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 181477 0.66 0.964922
Target:  5'- -gCGCCGccuGCAgCGUGGCg--UGGCUCa -3'
miRNA:   3'- caGUGGC---UGU-GCGCCGaaaGCCGAGg -5'
14003 3' -56.3 NC_003521.1 + 150706 0.66 0.964922
Target:  5'- -gCGCCGGCgGCGacuGGCUcUCGGCcgugggCCa -3'
miRNA:   3'- caGUGGCUG-UGCg--CCGAaAGCCGa-----GG- -5'
14003 3' -56.3 NC_003521.1 + 137466 0.66 0.964922
Target:  5'- -gCACCGACgaguggaaggGCGcCGGCgugucgCGGCgCCg -3'
miRNA:   3'- caGUGGCUG----------UGC-GCCGaaa---GCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 16509 0.66 0.964922
Target:  5'- aGUCACCGugACGgGGgcgUCuGGCcaCCa -3'
miRNA:   3'- -CAGUGGCugUGCgCCgaaAG-CCGa-GG- -5'
14003 3' -56.3 NC_003521.1 + 111294 0.66 0.964922
Target:  5'- -cCGCCGcgauggagaACugGuCGGCgcUCGaGCUCCu -3'
miRNA:   3'- caGUGGC---------UGugC-GCCGaaAGC-CGAGG- -5'
14003 3' -56.3 NC_003521.1 + 74176 0.66 0.964288
Target:  5'- --gGCCGACugcgcCGCGGCgcccggcgcgCGGC-CCg -3'
miRNA:   3'- cagUGGCUGu----GCGCCGaaa-------GCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 170216 0.66 0.963969
Target:  5'- cGUgACCGACAagcgcuuucucaacCGCGaGCUcggcgacCGGCUCUa -3'
miRNA:   3'- -CAgUGGCUGU--------------GCGC-CGAaa-----GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 121348 0.66 0.961675
Target:  5'- uUCACCcuGCACGCcccGCg--CGGCUUCa -3'
miRNA:   3'- cAGUGGc-UGUGCGc--CGaaaGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 206709 0.66 0.961675
Target:  5'- cGUCG-CGAUACGUgcgGGCggcgGGCUCCu -3'
miRNA:   3'- -CAGUgGCUGUGCG---CCGaaagCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 31183 0.66 0.961675
Target:  5'- aGUUuCUGAaaCACGUGGCguuguucacgUUCGGCaUCCa -3'
miRNA:   3'- -CAGuGGCU--GUGCGCCGa---------AAGCCG-AGG- -5'
14003 3' -56.3 NC_003521.1 + 105796 0.66 0.961675
Target:  5'- -cCACCGugACGCaGGCca-CGGUgCCc -3'
miRNA:   3'- caGUGGCugUGCG-CCGaaaGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 43232 0.66 0.961675
Target:  5'- -aCGCCGcACAUGUGGg---CGcGCUCCa -3'
miRNA:   3'- caGUGGC-UGUGCGCCgaaaGC-CGAGG- -5'
14003 3' -56.3 NC_003521.1 + 175865 0.66 0.961675
Target:  5'- gGUCACCGGCA----GCUUcUCGGcCUCCu -3'
miRNA:   3'- -CAGUGGCUGUgcgcCGAA-AGCC-GAGG- -5'
14003 3' -56.3 NC_003521.1 + 206296 0.66 0.961675
Target:  5'- uGUCGCCGcuCGCGCGuc--UCGGC-CCg -3'
miRNA:   3'- -CAGUGGCu-GUGCGCcgaaAGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 151570 0.66 0.961675
Target:  5'- uUCGCgGG-ACGCGGCgcgcguuagCGGuCUCCg -3'
miRNA:   3'- cAGUGgCUgUGCGCCGaaa------GCC-GAGG- -5'
14003 3' -56.3 NC_003521.1 + 113857 0.66 0.961675
Target:  5'- --gGCCGGCgACGaCGGCgcg-GGUUCCg -3'
miRNA:   3'- cagUGGCUG-UGC-GCCGaaagCCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.