miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 48272 0.66 0.997692
Target:  5'- aGAGAGGGAgaaGACGgGAgAGaggaCGaCGACa -3'
miRNA:   3'- -CUUUCCCUa--UUGCgCUgUCg---GC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 236343 0.66 0.997692
Target:  5'- -cGGGGGAgGACGauaaaagauCGGgGGCCGCAGg -3'
miRNA:   3'- cuUUCCCUaUUGC---------GCUgUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 78470 0.66 0.997692
Target:  5'- aGAcGGGGGgcuGCGCGcccacgcccGCAGUCGCcGCc -3'
miRNA:   3'- -CUuUCCCUau-UGCGC---------UGUCGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 96869 0.66 0.997692
Target:  5'- --cGGGuGGUAGCacucGCG-CAGCCGguGCg -3'
miRNA:   3'- cuuUCC-CUAUUG----CGCuGUCGGCguUG- -5'
14009 3' -51.5 NC_003521.1 + 17030 0.66 0.997692
Target:  5'- gGGAAGaGGAgcGACGacaaCGGCAGCaccaGCAGCg -3'
miRNA:   3'- -CUUUC-CCUa-UUGC----GCUGUCGg---CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 130346 0.66 0.997692
Target:  5'- ---cGGGcucAACGUG-CGGCCGCAGg -3'
miRNA:   3'- cuuuCCCua-UUGCGCuGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 165747 0.66 0.997692
Target:  5'- -uGAGGGA--GgGCGGCGGCgGCuuGCc -3'
miRNA:   3'- cuUUCCCUauUgCGCUGUCGgCGu-UG- -5'
14009 3' -51.5 NC_003521.1 + 25543 0.66 0.997692
Target:  5'- gGAGAGcgacGGcgGACGCuguugugcaGGCGGCCGCGGg -3'
miRNA:   3'- -CUUUC----CCuaUUGCG---------CUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 55752 0.66 0.997692
Target:  5'- ---cGGGcggcaGCGACAGgCGCGGCc -3'
miRNA:   3'- cuuuCCCuauugCGCUGUCgGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 127038 0.66 0.997314
Target:  5'- uGAAuAGGGAggaaccgaggauggaGACGCGgu-GCCGCGGCa -3'
miRNA:   3'- -CUU-UCCCUa--------------UUGCGCuguCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 73709 0.66 0.997269
Target:  5'- ---cGuGGAgcGCaGCGACccgGGCCGCGACc -3'
miRNA:   3'- cuuuC-CCUauUG-CGCUG---UCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 108290 0.66 0.997269
Target:  5'- -cGAGGGcgGugGUGGCGGUgaCGaCGACg -3'
miRNA:   3'- cuUUCCCuaUugCGCUGUCG--GC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 126792 0.66 0.997269
Target:  5'- cGAGGaGGAgAGCGCGACGGUcauCGguACc -3'
miRNA:   3'- cUUUC-CCUaUUGCGCUGUCG---GCguUG- -5'
14009 3' -51.5 NC_003521.1 + 150617 0.66 0.997269
Target:  5'- ---uGGGcUGuUGCGGCGGCUGCuGCg -3'
miRNA:   3'- cuuuCCCuAUuGCGCUGUCGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 140012 0.66 0.997269
Target:  5'- -cGAGuGGUAGuCGCGguaGCGGCCGCAGa -3'
miRNA:   3'- cuUUCcCUAUU-GCGC---UGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 107726 0.66 0.997269
Target:  5'- -cGAGGGcggcuguugcuGUAACcaguGUGGCGGCUGCGAUg -3'
miRNA:   3'- cuUUCCC-----------UAUUG----CGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 165014 0.66 0.997269
Target:  5'- -cGAGGaGGc--CGCGAUcGCCGCGGCu -3'
miRNA:   3'- cuUUCC-CUauuGCGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 187300 0.66 0.997224
Target:  5'- cGGAGcGGAcAGCaccaucggccgcuGCGAC-GCCGCAGCa -3'
miRNA:   3'- cUUUC-CCUaUUG-------------CGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 190239 0.66 0.996784
Target:  5'- ---uGGGGUcuUGCGACAG-CGCGAa -3'
miRNA:   3'- cuuuCCCUAuuGCGCUGUCgGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 113790 0.66 0.996784
Target:  5'- ----cGGccAGCGCGACGGgcaCCGCGGCg -3'
miRNA:   3'- cuuucCCuaUUGCGCUGUC---GGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.