Results 1 - 20 of 253 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14009 | 3' | -51.5 | NC_003521.1 | + | 55752 | 0.66 | 0.997692 |
Target: 5'- ---cGGGcggcaGCGACAGgCGCGGCc -3' miRNA: 3'- cuuuCCCuauugCGCUGUCgGCGUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 25543 | 0.66 | 0.997692 |
Target: 5'- gGAGAGcgacGGcgGACGCuguugugcaGGCGGCCGCGGg -3' miRNA: 3'- -CUUUC----CCuaUUGCG---------CUGUCGGCGUUg -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 165747 | 0.66 | 0.997692 |
Target: 5'- -uGAGGGA--GgGCGGCGGCgGCuuGCc -3' miRNA: 3'- cuUUCCCUauUgCGCUGUCGgCGu-UG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 130346 | 0.66 | 0.997692 |
Target: 5'- ---cGGGcucAACGUG-CGGCCGCAGg -3' miRNA: 3'- cuuuCCCua-UUGCGCuGUCGGCGUUg -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 17030 | 0.66 | 0.997692 |
Target: 5'- gGGAAGaGGAgcGACGacaaCGGCAGCaccaGCAGCg -3' miRNA: 3'- -CUUUC-CCUa-UUGC----GCUGUCGg---CGUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 236343 | 0.66 | 0.997692 |
Target: 5'- -cGGGGGAgGACGauaaaagauCGGgGGCCGCAGg -3' miRNA: 3'- cuUUCCCUaUUGC---------GCUgUCGGCGUUg -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 78470 | 0.66 | 0.997692 |
Target: 5'- aGAcGGGGGgcuGCGCGcccacgcccGCAGUCGCcGCc -3' miRNA: 3'- -CUuUCCCUau-UGCGC---------UGUCGGCGuUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 96869 | 0.66 | 0.997692 |
Target: 5'- --cGGGuGGUAGCacucGCG-CAGCCGguGCg -3' miRNA: 3'- cuuUCC-CUAUUG----CGCuGUCGGCguUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 48272 | 0.66 | 0.997692 |
Target: 5'- aGAGAGGGAgaaGACGgGAgAGaggaCGaCGACa -3' miRNA: 3'- -CUUUCCCUa--UUGCgCUgUCg---GC-GUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 127038 | 0.66 | 0.997314 |
Target: 5'- uGAAuAGGGAggaaccgaggauggaGACGCGgu-GCCGCGGCa -3' miRNA: 3'- -CUU-UCCCUa--------------UUGCGCuguCGGCGUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 140012 | 0.66 | 0.997269 |
Target: 5'- -cGAGuGGUAGuCGCGguaGCGGCCGCAGa -3' miRNA: 3'- cuUUCcCUAUU-GCGC---UGUCGGCGUUg -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 150617 | 0.66 | 0.997269 |
Target: 5'- ---uGGGcUGuUGCGGCGGCUGCuGCg -3' miRNA: 3'- cuuuCCCuAUuGCGCUGUCGGCGuUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 73709 | 0.66 | 0.997269 |
Target: 5'- ---cGuGGAgcGCaGCGACccgGGCCGCGACc -3' miRNA: 3'- cuuuC-CCUauUG-CGCUG---UCGGCGUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 107726 | 0.66 | 0.997269 |
Target: 5'- -cGAGGGcggcuguugcuGUAACcaguGUGGCGGCUGCGAUg -3' miRNA: 3'- cuUUCCC-----------UAUUG----CGCUGUCGGCGUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 126792 | 0.66 | 0.997269 |
Target: 5'- cGAGGaGGAgAGCGCGACGGUcauCGguACc -3' miRNA: 3'- cUUUC-CCUaUUGCGCUGUCG---GCguUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 108290 | 0.66 | 0.997269 |
Target: 5'- -cGAGGGcgGugGUGGCGGUgaCGaCGACg -3' miRNA: 3'- cuUUCCCuaUugCGCUGUCG--GC-GUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 165014 | 0.66 | 0.997269 |
Target: 5'- -cGAGGaGGc--CGCGAUcGCCGCGGCu -3' miRNA: 3'- cuUUCC-CUauuGCGCUGuCGGCGUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 187300 | 0.66 | 0.997224 |
Target: 5'- cGGAGcGGAcAGCaccaucggccgcuGCGAC-GCCGCAGCa -3' miRNA: 3'- cUUUC-CCUaUUG-------------CGCUGuCGGCGUUG- -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 190239 | 0.66 | 0.996784 |
Target: 5'- ---uGGGGUcuUGCGACAG-CGCGAa -3' miRNA: 3'- cuuuCCCUAuuGCGCUGUCgGCGUUg -5' |
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14009 | 3' | -51.5 | NC_003521.1 | + | 7996 | 0.66 | 0.996784 |
Target: 5'- -cGGGGGAgguacCGgGGCAgcGCCGUAGCu -3' miRNA: 3'- cuUUCCCUauu--GCgCUGU--CGGCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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