miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 5' -60.7 NC_003521.1 + 114246 0.66 0.853983
Target:  5'- aCCGgCACGaCGgcGGcuUCCCGCUgCCCAc -3'
miRNA:   3'- -GGCgGUGC-GCuaCCu-GGGGUGA-GGGU- -5'
14009 5' -60.7 NC_003521.1 + 107450 0.66 0.853983
Target:  5'- aCCGCCGCGCugugccGgcGGACCgugcugaucuCCACguccggcgCCCAg -3'
miRNA:   3'- -GGCGGUGCG------CuaCCUGG----------GGUGa-------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 213349 0.66 0.853983
Target:  5'- aCCGCCACaUGAcGGACCUgGCcagCCUg -3'
miRNA:   3'- -GGCGGUGcGCUaCCUGGGgUGa--GGGu -5'
14009 5' -60.7 NC_003521.1 + 208945 0.66 0.853983
Target:  5'- gCgGCCugGCGGUGcGGuaCCGCUCgCAc -3'
miRNA:   3'- -GgCGGugCGCUAC-CUggGGUGAGgGU- -5'
14009 5' -60.7 NC_003521.1 + 112979 0.66 0.853983
Target:  5'- aUGCCGCucaGCGgcGGGCgCCACUaccaCCCGg -3'
miRNA:   3'- gGCGGUG---CGCuaCCUGgGGUGA----GGGU- -5'
14009 5' -60.7 NC_003521.1 + 54181 0.66 0.853983
Target:  5'- aCCGCCGCGCGAcgucGACUugCCGC-CaCCAc -3'
miRNA:   3'- -GGCGGUGCGCUac--CUGG--GGUGaG-GGU- -5'
14009 5' -60.7 NC_003521.1 + 168809 0.66 0.853253
Target:  5'- -gGCCACGCGGcgcauccugaagcUGGGCCCCAgCgagCUg- -3'
miRNA:   3'- ggCGGUGCGCU-------------ACCUGGGGU-Ga--GGgu -5'
14009 5' -60.7 NC_003521.1 + 201910 0.66 0.846613
Target:  5'- gCCGCCACGacacaGAggcggGGACgCCGCaggaaaaCCCGa -3'
miRNA:   3'- -GGCGGUGCg----CUa----CCUGgGGUGa------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 1683 0.66 0.846613
Target:  5'- gCCGCCACGacacaGAggcggGGACgCCGCaggaaaaCCCGa -3'
miRNA:   3'- -GGCGGUGCg----CUa----CCUGgGGUGa------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 126973 0.66 0.846613
Target:  5'- gCGCCGuCGuCGccGGccGCCCCGCUgCCGc -3'
miRNA:   3'- gGCGGU-GC-GCuaCC--UGGGGUGAgGGU- -5'
14009 5' -60.7 NC_003521.1 + 210235 0.66 0.846613
Target:  5'- aCCGUCAgCGCGGacggcacuUGGaccuGCCCUAC-CCCGa -3'
miRNA:   3'- -GGCGGU-GCGCU--------ACC----UGGGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 44149 0.66 0.846613
Target:  5'- -aGCCGCGacauccuGGUGGACCUgCGCaCCCAg -3'
miRNA:   3'- ggCGGUGCg------CUACCUGGG-GUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 191155 0.66 0.846613
Target:  5'- gCGCCGCGCucgcccGGCCCCuCUCCa- -3'
miRNA:   3'- gGCGGUGCGcuac--CUGGGGuGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 181862 0.66 0.845867
Target:  5'- uUCGCCACGCac--GACCCCucggcgaGCUCgCCGa -3'
miRNA:   3'- -GGCGGUGCGcuacCUGGGG-------UGAG-GGU- -5'
14009 5' -60.7 NC_003521.1 + 166640 0.66 0.839075
Target:  5'- -gGCCGCGCGccGGGCgCCGCggCgCAg -3'
miRNA:   3'- ggCGGUGCGCuaCCUGgGGUGa-GgGU- -5'
14009 5' -60.7 NC_003521.1 + 142565 0.66 0.838312
Target:  5'- cCCGCCAggcucgccgugccCGCcGUGGccgcCCCCGcCUCCCc -3'
miRNA:   3'- -GGCGGU-------------GCGcUACCu---GGGGU-GAGGGu -5'
14009 5' -60.7 NC_003521.1 + 190059 0.66 0.834473
Target:  5'- aCCGCCGCGCGGucuucacguacguucUGG--CCCGCUgCUg -3'
miRNA:   3'- -GGCGGUGCGCU---------------ACCugGGGUGAgGGu -5'
14009 5' -60.7 NC_003521.1 + 225266 0.66 0.831373
Target:  5'- gUGUCGCGUGAaggUGGGCgCCCccucUUCCCAg -3'
miRNA:   3'- gGCGGUGCGCU---ACCUG-GGGu---GAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 204978 0.66 0.831373
Target:  5'- cUCGCC-CGCGAUGaACUCUACaUCCUc -3'
miRNA:   3'- -GGCGGuGCGCUACcUGGGGUG-AGGGu -5'
14009 5' -60.7 NC_003521.1 + 109766 0.66 0.831373
Target:  5'- gCCGCCAcCGCGuccgaGGcccGCCgCCGCcgCCCAg -3'
miRNA:   3'- -GGCGGU-GCGCua---CC---UGG-GGUGa-GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.