miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 61901 0.66 0.998065
Target:  5'- aGCc---UCgUCGCCgucauCGUGGUCGGCGUu -3'
miRNA:   3'- aCGuuuuAG-AGCGG-----GCACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 58968 0.66 0.998065
Target:  5'- cGCGAAGaagCGCgCCGUcaggcacugguGGUCGGCGUg -3'
miRNA:   3'- aCGUUUUagaGCG-GGCA-----------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 214725 0.66 0.998065
Target:  5'- cGCGucGUCU-GUCUGggcuucGGUCAGCGCc -3'
miRNA:   3'- aCGUuuUAGAgCGGGCa-----CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 208701 0.66 0.998065
Target:  5'- cGCGcccgCUaccUGCCCGaGAUCAGcCGCg -3'
miRNA:   3'- aCGUuuuaGA---GCGGGCaCUAGUC-GCG- -5'
14016 5' -51.4 NC_003521.1 + 95158 0.66 0.998065
Target:  5'- aGCAGGAaCUCGCgggCCGaGGgcaccucgcgcUCGGCGCg -3'
miRNA:   3'- aCGUUUUaGAGCG---GGCaCU-----------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 211933 0.66 0.998065
Target:  5'- cGCAGcGUCUCGUagaccuCCGUGAgcuUgGGCGa -3'
miRNA:   3'- aCGUUuUAGAGCG------GGCACU---AgUCGCg -5'
14016 5' -51.4 NC_003521.1 + 5526 0.66 0.998065
Target:  5'- cGCAucuGUCgUCGCCaguUGG-CGGCGCg -3'
miRNA:   3'- aCGUuu-UAG-AGCGGgc-ACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 109553 0.66 0.998065
Target:  5'- cGUAGGuUCUgGCCgGUGAaaUCAaaaGCGCc -3'
miRNA:   3'- aCGUUUuAGAgCGGgCACU--AGU---CGCG- -5'
14016 5' -51.4 NC_003521.1 + 124743 0.66 0.998065
Target:  5'- aGCGAGAaag-GCCCaUGAUCAGCaGCc -3'
miRNA:   3'- aCGUUUUagagCGGGcACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 100232 0.66 0.997926
Target:  5'- aGCGGAgcGUCUCGCCgGccgcgaaauccucGggCGGCGCc -3'
miRNA:   3'- aCGUUU--UAGAGCGGgCa------------CuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 239412 0.66 0.997702
Target:  5'- cGUucacGUCgUCGCUCuUGGUCAGCGUc -3'
miRNA:   3'- aCGuuu-UAG-AGCGGGcACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 91029 0.66 0.997702
Target:  5'- cGCGuGcgC-CGCaCCGUG-UCGGCGUg -3'
miRNA:   3'- aCGUuUuaGaGCG-GGCACuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 39184 0.66 0.997702
Target:  5'- cGUucacGUCgUCGCUCuUGGUCAGCGUc -3'
miRNA:   3'- aCGuuu-UAG-AGCGGGcACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 79507 0.66 0.997702
Target:  5'- cGCcgGAGcgCUUGCUgGUGggCAGCGg -3'
miRNA:   3'- aCG--UUUuaGAGCGGgCACuaGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 59571 0.66 0.997702
Target:  5'- cGCgGGGGUUUCGUCCGaGA--AGCGCg -3'
miRNA:   3'- aCG-UUUUAGAGCGGGCaCUagUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 179061 0.66 0.997702
Target:  5'- aGCAGAagcgucagcggGUCgcgUGCCCGUcGUCGGUGa -3'
miRNA:   3'- aCGUUU-----------UAGa--GCGGGCAcUAGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 165890 0.66 0.997702
Target:  5'- gGCAGAuggacucCUUGCCCGUGAU-GGC-Ca -3'
miRNA:   3'- aCGUUUua-----GAGCGGGCACUAgUCGcG- -5'
14016 5' -51.4 NC_003521.1 + 137504 0.66 0.997282
Target:  5'- cGCGAGGUCUgGgaCGUG--CAGCGCc -3'
miRNA:   3'- aCGUUUUAGAgCggGCACuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 88514 0.66 0.997282
Target:  5'- cGCAGcgaCUCGCagCCGUGca-GGCGCa -3'
miRNA:   3'- aCGUUuuaGAGCG--GGCACuagUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 62232 0.66 0.997282
Target:  5'- cUGCAGGAgggCGCCCGgcugGAc--GCGCg -3'
miRNA:   3'- -ACGUUUUagaGCGGGCa---CUaguCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.