miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 53204 0.66 0.956723
Target:  5'- cGCGCGgcccggcucgcccugGCAGGccGuGCCCACCGgcagcAGAa -3'
miRNA:   3'- cCGCGC---------------UGUCCauCuCGGGUGGU-----UCU- -5'
14029 3' -56.6 NC_003521.1 + 87641 0.66 0.955245
Target:  5'- cGCGCaucggcaucgagGACAGcGUGGAGUcguuCCugCAGGAc -3'
miRNA:   3'- cCGCG------------CUGUC-CAUCUCG----GGugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 4218 0.66 0.955245
Target:  5'- gGGCGgGAaGGGUgucGGAGCCCcgaggcuggcuGCCGugAGAu -3'
miRNA:   3'- -CCGCgCUgUCCA---UCUCGGG-----------UGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 108066 0.66 0.955245
Target:  5'- -aUGUGACGuucauGGUuuuGGGGCCgGCCAGGAu -3'
miRNA:   3'- ccGCGCUGU-----CCA---UCUCGGgUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 235605 0.66 0.955245
Target:  5'- aGGCG-GACucGGGcGGAGCCCgACCGc-- -3'
miRNA:   3'- -CCGCgCUG--UCCaUCUCGGG-UGGUucu -5'
14029 3' -56.6 NC_003521.1 + 191810 0.66 0.955245
Target:  5'- cGGCGUGACu-GUAcugcccccuacGAcGCCCugCGAGAu -3'
miRNA:   3'- -CCGCGCUGucCAU-----------CU-CGGGugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 192910 0.66 0.954494
Target:  5'- aGCGCGAaggccguCAGGgccaucaGGAcggcgaaGCCCACUAGGAa -3'
miRNA:   3'- cCGCGCU-------GUCCa------UCU-------CGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 144973 0.66 0.951402
Target:  5'- uGCGCGACAuccuGAGCCagcggcaugcCACCGAGGc -3'
miRNA:   3'- cCGCGCUGUccauCUCGG----------GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 203450 0.66 0.951402
Target:  5'- cGUGCGGaAGGUu--GgCCACCAAGAa -3'
miRNA:   3'- cCGCGCUgUCCAucuCgGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 110070 0.66 0.951402
Target:  5'- cGGCGCGGCGcuc-GcGCCCGCCGAc- -3'
miRNA:   3'- -CCGCGCUGUccauCuCGGGUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 112030 0.66 0.951402
Target:  5'- -aCGCGcCuGGUGGAGgCCGCCAc-- -3'
miRNA:   3'- ccGCGCuGuCCAUCUCgGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 53181 0.66 0.951402
Target:  5'- aGGUcgGCGACGccgucGGUGaacccuccgguGAGCUCGCCGGGGa -3'
miRNA:   3'- -CCG--CGCUGU-----CCAU-----------CUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 74906 0.66 0.951402
Target:  5'- cGGUgGCGGC-GGUGGAGUCgGCCcGGc -3'
miRNA:   3'- -CCG-CGCUGuCCAUCUCGGgUGGuUCu -5'
14029 3' -56.6 NC_003521.1 + 128760 0.66 0.951402
Target:  5'- uGGUGUaGguGGUGGGGUUCuCCAGGAu -3'
miRNA:   3'- -CCGCGcUguCCAUCUCGGGuGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 151815 0.66 0.947345
Target:  5'- uGGCGCc---GGUGGGGCCCGCg---- -3'
miRNA:   3'- -CCGCGcuguCCAUCUCGGGUGguucu -5'
14029 3' -56.6 NC_003521.1 + 42969 0.66 0.947345
Target:  5'- aGCGCGACccGccGGcGCCCACCGAcGAc -3'
miRNA:   3'- cCGCGCUGucCa-UCuCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 39395 0.66 0.947345
Target:  5'- aGGCGgGGCGauGuUGGAGCCgaguuugggCGCCGAGAa -3'
miRNA:   3'- -CCGCgCUGU--CcAUCUCGG---------GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 154295 0.66 0.947345
Target:  5'- cGGgGCGGCAcGGcguccGGGGCCgACgCGGGAa -3'
miRNA:   3'- -CCgCGCUGU-CCa----UCUCGGgUG-GUUCU- -5'
14029 3' -56.6 NC_003521.1 + 76257 0.66 0.947345
Target:  5'- aGGCGCGAgAGGcgcacGGCcgCCugCGAGAc -3'
miRNA:   3'- -CCGCGCUgUCCauc--UCG--GGugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 102461 0.66 0.947345
Target:  5'- cGGCGCaGCAGGauGAGCUgGCaUAGGAu -3'
miRNA:   3'- -CCGCGcUGUCCauCUCGGgUG-GUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.