miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 119594 0.66 0.65806
Target:  5'- --gCUGGGCGgcgGGUGCaGCGUcucgugcugcaGGUGGa -3'
miRNA:   3'- ccgGACCCGCa--CCGCGaCGCG-----------CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 151296 0.66 0.65806
Target:  5'- aGCCUGGGUuccgacGCGCgcaagGCGgccaGGCGGg -3'
miRNA:   3'- cCGGACCCGcac---CGCGa----CGCg---CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 224078 0.66 0.65806
Target:  5'- cGuCCUccGGCG-GGCGCgcGCGCcGGCGGu -3'
miRNA:   3'- cC-GGAc-CCGCaCCGCGa-CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 232543 0.66 0.655279
Target:  5'- -uUCUGGGCGaggUGGCcuacuacgggggcuGCUGUGUGGUGa -3'
miRNA:   3'- ccGGACCCGC---ACCG--------------CGACGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 169941 0.66 0.655279
Target:  5'- uGGCCcuGGUGUGGCgauaugucgucGUUGCucuccuccugggagGCGGCGGc -3'
miRNA:   3'- -CCGGacCCGCACCG-----------CGACG--------------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 119804 0.66 0.655279
Target:  5'- cGCCagcgGGGCGacacGGUGgUGCGCacgccccagugguaGGCGGu -3'
miRNA:   3'- cCGGa---CCCGCa---CCGCgACGCG--------------CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 209041 0.66 0.648786
Target:  5'- cGGCCuucugcgagUGcGGCGacUGGCGCgaccccgaugUGCcggucgagGCGGCGGa -3'
miRNA:   3'- -CCGG---------AC-CCGC--ACCGCG----------ACG--------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 120944 0.66 0.648786
Target:  5'- cGGCUccGGCGaGGgGCaggggGCGgGGCGGu -3'
miRNA:   3'- -CCGGacCCGCaCCgCGa----CGCgCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 128962 0.66 0.648786
Target:  5'- gGGCUgGcGGCGUGGCGCUGgaaaaagaCGauGCuGGg -3'
miRNA:   3'- -CCGGaC-CCGCACCGCGAC--------GCgcCG-CC- -5'
14029 5' -65.3 NC_003521.1 + 168526 0.66 0.648786
Target:  5'- cGCCagcaGGC-UGGCgGCcaGCGCGGCGGc -3'
miRNA:   3'- cCGGac--CCGcACCG-CGa-CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 198314 0.66 0.648786
Target:  5'- -cCCUGGGgGUGGgGgaUGgGCGGCu- -3'
miRNA:   3'- ccGGACCCgCACCgCg-ACgCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 107723 0.66 0.647858
Target:  5'- uGGCgaGGGCGgcUGuuGCUGUaaccaguGUGGCGGc -3'
miRNA:   3'- -CCGgaCCCGC--ACcgCGACG-------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 117494 0.66 0.639501
Target:  5'- gGGCCUGuccGGCGgGGCGUa---CGGCGGu -3'
miRNA:   3'- -CCGGAC---CCGCaCCGCGacgcGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 38324 0.66 0.639501
Target:  5'- cGGCCaaGGGCGaUGGCGUUuuaggaacguucGC-CGGCGu -3'
miRNA:   3'- -CCGGa-CCCGC-ACCGCGA------------CGcGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 166261 0.66 0.639501
Target:  5'- gGGCCgugcucacGGGCac-GCGCacgGCGCGGCuGGu -3'
miRNA:   3'- -CCGGa-------CCCGcacCGCGa--CGCGCCG-CC- -5'
14029 5' -65.3 NC_003521.1 + 113740 0.66 0.639501
Target:  5'- cGGgCUGGGCcgccucucgucgGUGGCcCUGCcCGGCa- -3'
miRNA:   3'- -CCgGACCCG------------CACCGcGACGcGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 218376 0.66 0.639501
Target:  5'- aGCCa-GGCGUGccGCGUgaaGCGCgGGCGGu -3'
miRNA:   3'- cCGGacCCGCAC--CGCGa--CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 21271 0.66 0.638572
Target:  5'- uGGCCccguaucUGGaGCGcuucgcggucUGGCuGC-GCGUGGCGGu -3'
miRNA:   3'- -CCGG-------ACC-CGC----------ACCG-CGaCGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 80007 0.66 0.630212
Target:  5'- gGGCUUGGGC--GGCuuCUGCuGCGGCu- -3'
miRNA:   3'- -CCGGACCCGcaCCGc-GACG-CGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 206429 0.66 0.630212
Target:  5'- -uCCaacgGGGCGUGGUGUagcgauugacgUGgGCGGgGGa -3'
miRNA:   3'- ccGGa---CCCGCACCGCG-----------ACgCGCCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.