miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 165611 0.66 0.992094
Target:  5'- uCGUGGUUGGCGGCGUGcagaAUGuaGUa- -3'
miRNA:   3'- cGCACCAGUUGCCGUAC----UACggCAcg -5'
14035 3' -53.6 NC_003521.1 + 196221 0.66 0.992094
Target:  5'- aGCGUGuGUCGcaGCuGCA-GGUGUCGcGCg -3'
miRNA:   3'- -CGCAC-CAGU--UGcCGUaCUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 226367 0.66 0.992094
Target:  5'- cGCG-GGagCGGCGGC-UGAcGCCGccGCa -3'
miRNA:   3'- -CGCaCCa-GUUGCCGuACUaCGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 179888 0.66 0.992094
Target:  5'- uCGaUGGUCAugGGCGaacccuUGCCGUa- -3'
miRNA:   3'- cGC-ACCAGUugCCGUacu---ACGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 59157 0.66 0.992094
Target:  5'- -gGUGGaUCAgcuGCGGCAcGgcGCCGcggGCa -3'
miRNA:   3'- cgCACC-AGU---UGCCGUaCuaCGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 151398 0.66 0.990993
Target:  5'- uGCGgggacgGGUaggGACGGCGUGuguauGUGCUgcuuGUGCg -3'
miRNA:   3'- -CGCa-----CCAg--UUGCCGUAC-----UACGG----CACG- -5'
14035 3' -53.6 NC_003521.1 + 117273 0.66 0.990993
Target:  5'- cCGccGUCGuCGGcCGUGGUGCCG-GCu -3'
miRNA:   3'- cGCacCAGUuGCC-GUACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 127367 0.66 0.990993
Target:  5'- cCGUGGUgcGCGGCA-GGUG-CGUGa -3'
miRNA:   3'- cGCACCAguUGCCGUaCUACgGCACg -5'
14035 3' -53.6 NC_003521.1 + 118703 0.66 0.990993
Target:  5'- cCGUGuUCAgccGCGGCGaGAcGCCGcUGCa -3'
miRNA:   3'- cGCACcAGU---UGCCGUaCUaCGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 68676 0.66 0.990993
Target:  5'- aGCGUGGaagaGGCGGCcAUG-UGCCGc-- -3'
miRNA:   3'- -CGCACCag--UUGCCG-UACuACGGCacg -5'
14035 3' -53.6 NC_003521.1 + 153346 0.66 0.990876
Target:  5'- aCGUGuUCAGCagcuGGCAgaucuucUGGUGCCG-GCa -3'
miRNA:   3'- cGCACcAGUUG----CCGU-------ACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 93064 0.66 0.989774
Target:  5'- cCGUGGUgGugGcCAUGG-GCCuGUGCu -3'
miRNA:   3'- cGCACCAgUugCcGUACUaCGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 128324 0.66 0.989774
Target:  5'- aGCGgauaaaggGGUCGuuCuGCGUGAUGCCGa-- -3'
miRNA:   3'- -CGCa-------CCAGUu-GcCGUACUACGGCacg -5'
14035 3' -53.6 NC_003521.1 + 144698 0.66 0.989774
Target:  5'- aCGUGGaggCAAC-GCGg---GCCGUGCa -3'
miRNA:   3'- cGCACCa--GUUGcCGUacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 149744 0.66 0.989774
Target:  5'- aGUGgcaGGUCuucuGCGGCGaggGcgGCCGcGCg -3'
miRNA:   3'- -CGCa--CCAGu---UGCCGUa--CuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 103799 0.66 0.989774
Target:  5'- cCGUGcUC--CGGCGaGAUGaCCGUGCg -3'
miRNA:   3'- cGCACcAGuuGCCGUaCUAC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 226310 0.66 0.98857
Target:  5'- gGCGUGGUgucguugaggaacaaGAUGuGCAUGGUGCgCGcGCc -3'
miRNA:   3'- -CGCACCAg--------------UUGC-CGUACUACG-GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 217641 0.66 0.988429
Target:  5'- gGCGUGGUCGgggggcAUGGCggGAU-CCGgggGUu -3'
miRNA:   3'- -CGCACCAGU------UGCCGuaCUAcGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 58829 0.66 0.988429
Target:  5'- cGCGUGG-CGGCcgugacguuacuGGCGcgGAUGCCcaGCa -3'
miRNA:   3'- -CGCACCaGUUG------------CCGUa-CUACGGcaCG- -5'
14035 3' -53.6 NC_003521.1 + 49115 0.66 0.988429
Target:  5'- cGCGUGGUgAccGCGGCGcc--GCUGcUGCg -3'
miRNA:   3'- -CGCACCAgU--UGCCGUacuaCGGC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.